y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00005341m |
Family | AA7 |
Protein Properties | Length: 442 Molecular Weight: 49091.8 Isoelectric Point: 8.7429 |
Chromosome | Chromosome/Scaffold: 018070 Start: 8349 End: 9674 |
Description | FAD-binding Berberine family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA7 | 1 | 216 | 0 |
AAVSCGRRHGVLVRARSGGHDYEGLSYASLDPRERFAVLDLAAFREVRVDAARAEAWAGSGATLGEVYYAVGAASRALAFPAGVCPTVGVGGHLSGGGFG TLMRRYGLAADNVLDAVLVDADGRLLNRTTMGEDLFWAIRGGGGESFGVVLSWKLRLVPVPETVTVFTVRRSRNQSATELITKWQEIAPALPRDLILRVV VQSRHAQFEALFLGRC |
Full Sequence |
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Protein Sequence Length: 442 Download |
AAVSCGRRHG VLVRARSGGH DYEGLSYASL DPRERFAVLD LAAFREVRVD AARAEAWAGS 60 GATLGEVYYA VGAASRALAF PAGVCPTVGV GGHLSGGGFG TLMRRYGLAA DNVLDAVLVD 120 ADGRLLNRTT MGEDLFWAIR GGGGESFGVV LSWKLRLVPV PETVTVFTVR RSRNQSATEL 180 ITKWQEIAPA LPRDLILRVV VQSRHAQFEA LFLGRCSRLL DHMRAHFPDL GVSRADCEEL 240 SWIQSTVYFA FYSSSKPVEL LLDRIGETGR YVKAKSDYVQ DPIPRHAWES TWSWLEKPEA 300 GLLILDPYGG RMASISPSAT PFPHRKGNLY NLQYYSFWFE NGMAALEKRM SWVRGLYREM 360 EPYVSKNPRT GYVNYRDLDL GTNELEGNVT SYAKARIWGE KYFRGNFERL AAVKAMVDPD 420 DFFRNEQSIP PLPAAKGWSS I* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam08031 | BBE | 5.0e-18 | 372 | 430 | 59 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. |
Gene Ontology | |
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GO Term | Description |
GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
GO:0016491 | oxidoreductase activity |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAD54128.1 | 0 | 3 | 441 | 97 | 535 | putative CPRD2 [Oryza sativa Japonica Group] |
GenBank | EAZ01285.1 | 0 | 3 | 441 | 97 | 500 | hypothetical protein OsI_23309 [Oryza sativa Indica Group] |
GenBank | EEE65853.1 | 0 | 3 | 441 | 97 | 513 | hypothetical protein OsJ_21632 [Oryza sativa Japonica Group] |
RefSeq | NP_001057826.1 | 0 | 3 | 441 | 1308 | 1746 | Os06g0548100 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001143977.1 | 0 | 1 | 441 | 91 | 531 | hypothetical protein LOC100276794 [Zea mays] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 4dns_B | 0 | 1 | 432 | 69 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 4dns_A | 0 | 1 | 432 | 69 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsj_B | 0 | 1 | 432 | 67 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsj_A | 0 | 1 | 432 | 67 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsh_A | 0 | 1 | 432 | 67 | 496 | A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
cannabinoid biosynthesis | RXN-7854 | EC-1.21.3 | tetrahydrocannabinolic acid synthase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DR973344 | 263 | 145 | 407 | 0 |
HX127313 | 261 | 177 | 435 | 0 |
BM267379 | 190 | 253 | 442 | 0 |
FL945189 | 258 | 101 | 357 | 0 |
FL945189 | 58 | 307 | 364 | 0.00000000001 |
Sequence Alignments (This image is cropped. Click for full image.) |
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