Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00005355m |
Family | GH28 |
Protein Properties | Length: 308 Molecular Weight: 33086.9 Isoelectric Point: 8.6052 |
Chromosome | Chromosome/Scaffold: 0177525 Start: 42 End: 1556 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 6 | 296 | 0 |
QGTLKAATDLKQFGNDWIEFGWVNGLTVTGGTIDGQGAASWPFNKCPVRKDCKVLPTSVLFVNNQNTVVKDLTSVNPKFFHIALLSCKSIKMSGLKISAP SNSPNTDGIHIERSAGVYIMDTHIATGDDCISVGQGNDNVDVARVQCGPGHGMSVGSLGRYAGEGDVTRVHIRDMTFTGTTNGVRIKTWENSPTKSNAAH MVFENLIMNDVQSPIIIDQKYCPYYNCEHKYVSGVTIKDIQFKNIKGTATTPVAVLLRCGVPCQGLVLQDVNLRYKGQGTVSAKCENAKAK |
Full Sequence |
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Protein Sequence Length: 308 Download |
MGSSVQGTLK AATDLKQFGN DWIEFGWVNG LTVTGGTIDG QGAASWPFNK CPVRKDCKVL 60 PTSVLFVNNQ NTVVKDLTSV NPKFFHIALL SCKSIKMSGL KISAPSNSPN TDGIHIERSA 120 GVYIMDTHIA TGDDCISVGQ GNDNVDVARV QCGPGHGMSV GSLGRYAGEG DVTRVHIRDM 180 TFTGTTNGVR IKTWENSPTK SNAAHMVFEN LIMNDVQSPI IIDQKYCPYY NCEHKYVSGV 240 TIKDIQFKNI KGTATTPVAV LLRCGVPCQG LVLQDVNLRY KGQGTVSAKC ENAKAKYVGV 300 QLPKPCP* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 1.0e-63 | 7 | 304 | 307 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-65 | 22 | 306 | 290 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 7.0e-68 | 5 | 306 | 307 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 2.0e-85 | 5 | 294 | 293 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 0 | 3 | 307 | 311 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EEC83381.1 | 0 | 73 | 307 | 2 | 236 | hypothetical protein OsI_28796 [Oryza sativa Indica Group] |
GenBank | EEE68484.1 | 0 | 7 | 307 | 86 | 389 | hypothetical protein OsJ_26895 [Oryza sativa Japonica Group] |
RefSeq | NP_001061556.1 | 0 | 5 | 307 | 102 | 407 | Os08g0327200 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002437842.1 | 0 | 5 | 306 | 93 | 394 | hypothetical protein SORBIDRAFT_10g003580 [Sorghum bicolor] |
RefSeq | XP_002444237.1 | 0 | 8 | 307 | 92 | 391 | hypothetical protein SORBIDRAFT_07g016970 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 3e-17 | 36 | 245 | 117 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 0.000000000002 | 110 | 292 | 152 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.000000000002 | 110 | 292 | 152 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.000000000002 | 110 | 292 | 152 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.000000000002 | 110 | 292 | 152 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FL808112 | 235 | 5 | 239 | 0 |
FL763552 | 169 | 140 | 308 | 0 |
DV550450 | 179 | 128 | 306 | 0 |
FL746613 | 160 | 5 | 164 | 0 |
FL768696 | 153 | 156 | 308 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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