| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00005360m |
| Family | GH51 |
| Protein Properties | Length: 557 Molecular Weight: 61922.7 Isoelectric Point: 4.7158 |
| Chromosome | Chromosome/Scaffold: 017885 Start: 1232 End: 7964 |
| Description | alpha-L-arabinofuranosidase 1 |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH51 | 117 | 430 | 0 |
| VLWLDQVSLMPSDTYKGHGFRKELMHMLLELKPQFLRFPGGCFVEGNWLRNAFRWKETIGPWEERPGHYGDVWNYWTDDGLGYYEFLLLAEDLGTLPVWV FNAGISHNDGVNSSMVTPFVQDVFDGLEFARGSADSTWGSVRATMGHPKSFPLKFVAIGNEDCDKEFYQENYLEFYNALKEAYPDIQVVSNCENSSGSLG RPADLYDSHIYSNAIDVFLMKSKFDRTPRTGPKVFVSEYAVNEPKDAGQGNLLASLAEAALLTGLETNSDIVQMACYAPLFTNDNDRRWNPDAIVFNSWQ HYGTPSYWMQTFFR | |||
| Full Sequence |
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| Protein Sequence Length: 557 Download |
| MADRVSCFTK NTVALRMEVL CDNCPPGGVG IYNPGFWGMN IEEGKAYNLV MYIRSSDSVD 60 LTASLTCSRP SSALQNLASA PIQDINVSNW TKVELQLLAQ GTCRTARLDL TTFKRGVLWL 120 DQVSLMPSDT YKGHGFRKEL MHMLLELKPQ FLRFPGGCFV EGNWLRNAFR WKETIGPWEE 180 RPGHYGDVWN YWTDDGLGYY EFLLLAEDLG TLPVWVFNAG ISHNDGVNSS MVTPFVQDVF 240 DGLEFARGSA DSTWGSVRAT MGHPKSFPLK FVAIGNEDCD KEFYQENYLE FYNALKEAYP 300 DIQVVSNCEN SSGSLGRPAD LYDSHIYSNA IDVFLMKSKF DRTPRTGPKV FVSEYAVNEP 360 KDAGQGNLLA SLAEAALLTG LETNSDIVQM ACYAPLFTND NDRRWNPDAI VFNSWQHYGT 420 PSYWMQTFFR ESSGAMIHPV QITSSYSDSL AASAITWNDT ENSFLRVKIV NFGSHAVNLT 480 IRATGLQAST AVNTMASRLT VLTSSNVMDE NSFSNPNNVV PIIRELPNAA EETHALLNPY 540 SLTSFDLALE QKAGVV* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3534 | AbfA | 3.0e-5 | 385 | 522 | 152 | + Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism] | ||
| COG3534 | AbfA | 5.0e-26 | 135 | 277 | 143 | + Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism] | ||
| pfam06964 | Alpha-L-AF_C | 3.0e-28 | 385 | 541 | 166 | + Alpha-L-arabinofuranosidase C-terminus. This family represents the C-terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (EC:3.2.1.55). This catalyzes the hydrolysis of nonreducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides. | ||
| smart00813 | Alpha-L-AF_C | 3.0e-40 | 353 | 541 | 200 | + Alpha-L-arabinofuranosidase C-terminus. This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase. This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0046373 | L-arabinose metabolic process |
| GO:0046556 | alpha-N-arabinofuranosidase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC67598.1 | 0 | 3 | 551 | 109 | 651 | hypothetical protein OsI_34967 [Oryza sativa Indica Group] |
| GenBank | EEC67602.1 | 0 | 3 | 556 | 77 | 625 | hypothetical protein OsI_34972 [Oryza sativa Indica Group] |
| RefSeq | NP_001065664.1 | 0 | 3 | 556 | 106 | 654 | Os11g0132600 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001066062.1 | 0 | 3 | 551 | 111 | 653 | Os12g0128700 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001066063.1 | 0 | 3 | 549 | 28 | 570 | Os12g0128800 [Oryza sativa (japonica cultivar-group)] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3s2c_L | 2e-18 | 135 | 550 | 48 | 484 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_K | 2e-18 | 135 | 550 | 48 | 484 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_J | 2e-18 | 135 | 550 | 48 | 484 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_I | 2e-18 | 135 | 550 | 48 | 484 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_H | 2e-18 | 135 | 550 | 48 | 484 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| JG936139 | 278 | 280 | 557 | 0 |
| HO852683 | 419 | 135 | 549 | 0 |
| GT046204 | 349 | 120 | 468 | 0 |
| GT048615 | 351 | 180 | 529 | 0 |
| GO801860 | 313 | 3 | 315 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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