Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00005480m |
Family | GT47 |
Protein Properties | Length: 540 Molecular Weight: 59773.6 Isoelectric Point: 8.2598 |
Chromosome | Chromosome/Scaffold: 018028 Start: 5615 End: 7812 |
Description | glycosyltransferase 18 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 81 | 433 | 0 |
CEAGLVYVYDLPPEFNHDLVDDCESLWPWYSFCPYLTNGGFGEAAATLPVFFNVTRNVSLHSWYNTDQFQLEVIIHRRLLSHQCRTTDPSQASAFYVPFY VGLDVGSHLWGDNSTAADRDRAGFRLLRWLKNQTSFQRSGGWDHFITLGRITWDFRRYGDDGWGTNFVVLPGMANVTRLAIEADTLDPMDVGVPYPTGFH PHAAADVRAWQRHVLSRKRSKLFGFAGAPRSGFRSDFRGVLLEECEDAGSERCRAVDCRGTRCTDNGAAVLELFLDSRFCLQPRGDSFTRGSMFDCMVAG AVPVLFWRRTAYDQYRWYLPPGPRGDKGEWSVFIDRQALRVGNVSVRDVLEGI |
Full Sequence |
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Protein Sequence Length: 540 Download |
MPESPASPAQ PPSQPGSPLD GAAPSPVPAL LRGSVLLLAF LVLELVLFWS LLDSPVSFRF 60 LPAPGRRNTT WPNGAVDAGA CEAGLVYVYD LPPEFNHDLV DDCESLWPWY SFCPYLTNGG 120 FGEAAATLPV FFNVTRNVSL HSWYNTDQFQ LEVIIHRRLL SHQCRTTDPS QASAFYVPFY 180 VGLDVGSHLW GDNSTAADRD RAGFRLLRWL KNQTSFQRSG GWDHFITLGR ITWDFRRYGD 240 DGWGTNFVVL PGMANVTRLA IEADTLDPMD VGVPYPTGFH PHAAADVRAW QRHVLSRKRS 300 KLFGFAGAPR SGFRSDFRGV LLEECEDAGS ERCRAVDCRG TRCTDNGAAV LELFLDSRFC 360 LQPRGDSFTR GSMFDCMVAG AVPVLFWRRT AYDQYRWYLP PGPRGDKGEW SVFIDRQALR 420 VGNVSVRDVL EGISERRARR MQERVVDMIP RLVYSSSSDG LGDGMEDALD VALGGVLERI 480 RRRRGSIARE ARPEGPFVAR RVDVKSTAAA PHSDGQNGSA AAIGRGAPAK TKGRQLRRT* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 1.0e-53 | 80 | 415 | 347 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAY95237.1 | 0 | 81 | 486 | 64 | 467 | hypothetical protein OsI_17054 [Oryza sativa Indica Group] |
GenBank | EAZ00823.1 | 0 | 16 | 490 | 15 | 487 | hypothetical protein OsI_22853 [Oryza sativa Indica Group] |
GenBank | EAZ36900.1 | 0 | 16 | 490 | 15 | 487 | hypothetical protein OsJ_21244 [Oryza sativa Japonica Group] |
RefSeq | NP_001057569.1 | 0 | 16 | 519 | 15 | 519 | Os06g0342000 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002448367.1 | 0 | 1 | 527 | 1 | 537 | hypothetical protein SORBIDRAFT_06g026010 [Sorghum bicolor] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EE161828 | 265 | 127 | 391 | 0 |
EE180597 | 243 | 149 | 391 | 0 |
EE161829 | 240 | 152 | 391 | 0 |
EE180596 | 234 | 127 | 360 | 0 |
FL823422 | 217 | 19 | 235 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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