Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00005511m |
Family | GH3 |
Protein Properties | Length: 236 Molecular Weight: 24773.2 Isoelectric Point: 7.3004 |
Chromosome | Chromosome/Scaffold: 017840 Start: 3 End: 2764 |
Description | beta-D-xylosidase 4 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH3 | 83 | 225 | 2.90069e-42 |
ALPRLGIPAYEWWSEALHGVSYVGPGTRFSPLVPGATSFPQPILTAASFNATLFRAIGEVVSNEARAMHNVGLAGLTFWSPNINIFRDPRWGRGQETPGE DPLLTSKYAVGYVTGLQDAGSGAGDSLKVAACCKHYTAYDVDN |
Full Sequence |
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Protein Sequence Length: 236 Download |
MAAAAPPFPA SAAAALLLLP LLLCLSGGCN AQTPVFACDA SNATLAAYGF CNRSATAAAR 60 AADLVSRLTL AEKVGFLVDK QAALPRLGIP AYEWWSEALH GVSYVGPGTR FSPLVPGATS 120 FPQPILTAAS FNATLFRAIG EVVSNEARAM HNVGLAGLTF WSPNINIFRD PRWGRGQETP 180 GEDPLLTSKY AVGYVTGLQD AGSGAGDSLK VAACCKHYTA YDVDNWKGVE RYTFNA 240 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PRK15098 | PRK15098 | 2.0e-13 | 79 | 221 | 147 | + beta-D-glucoside glucohydrolase; Provisional | ||
COG1472 | BglX | 1.0e-20 | 80 | 221 | 144 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
pfam00933 | Glyco_hydro_3 | 5.0e-30 | 82 | 221 | 141 | + Glycosyl hydrolase family 3 N terminal domain. | ||
PLN03080 | PLN03080 | 3.0e-86 | 34 | 236 | 210 | + Probable beta-xylosidase; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAK38481.1 | 0 | 30 | 236 | 33 | 241 | alpha-L-arabinofuranosidase/beta-D-xylosidase isoenzyme ARA-I [Hordeum vulgare] |
DDBJ | BAE44362.1 | 0 | 1 | 236 | 1 | 240 | alpha-L-arabinofuranosidase [Raphanus sativus] |
RefSeq | NP_001054038.1 | 0 | 29 | 236 | 20 | 230 | Os04g0640700 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_201262.1 | 0 | 5 | 236 | 13 | 245 | XYL4; hydrolase, hydrolyzing O-glycosyl compounds / xylan 1,4-beta-xylosidase [Arabidopsis thaliana] |
RefSeq | XP_002448619.1 | 0 | 29 | 236 | 24 | 233 | hypothetical protein SORBIDRAFT_06g030270 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 4i3g_B | 1e-16 | 59 | 236 | 52 | 212 | A Chain A, Crystal Structure Of Desr, A Beta-glucosidase From Streptomyces Venezuelae In Complex With D-glucose. |
PDB | 4i3g_A | 1e-16 | 59 | 236 | 52 | 212 | A Chain A, Crystal Structure Of Desr, A Beta-glucosidase From Streptomyces Venezuelae In Complex With D-glucose. |
PDB | 2x42_A | 0.000000000006 | 60 | 220 | 3 | 167 | A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga Neapolitana In Complex With Alpha-D-Glucose |
PDB | 2x41_A | 0.000000000006 | 60 | 220 | 3 | 167 | A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga Neapolitana In Complex With Alpha-D-Glucose |
PDB | 2x40_A | 0.000000000006 | 60 | 220 | 3 | 167 | A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga Neapolitana In Complex With Glycerol |