| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00005512m |
| Family | GH14 |
| Protein Properties | Length: 342 Molecular Weight: 37930.6 Isoelectric Point: 6.3886 |
| Chromosome | Chromosome/Scaffold: 0174687 Start: 1412 End: 2521 |
| Description | beta-amylase 3 |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH14 | 1 | 308 | 0 |
| DRSGARHEGCLSFAIDELPVLRGRSPLQLYEAFFRGFAAAFEDFFDDSTITDVTVGLGVHGVLRYPSYPPGSDARKFTGVGEFQCYDKYMLAQLRREAEE AGNAMWGLSGPHDAPRYHESPDSCGFFRERGGSWETPYGDFFLSWYAGQLVGHGDRVLGMASAVFAGKPVELSAKIPFMHWWHGAQSRPAEAAAGFYKSG KKNGYSPVAKMFARHGCTMVVPGMDVCMNKQHHSTGSSPDQLLVQIKNACRRHGARIAGENASLVMTHTSSFSRIRSNILTAEFMRPCHFTYQRMGAEFF SPDHFPQF | |||
| Full Sequence |
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| Protein Sequence Length: 342 Download |
| DRSGARHEGC LSFAIDELPV LRGRSPLQLY EAFFRGFAAA FEDFFDDSTI TDVTVGLGVH 60 GVLRYPSYPP GSDARKFTGV GEFQCYDKYM LAQLRREAEE AGNAMWGLSG PHDAPRYHES 120 PDSCGFFRER GGSWETPYGD FFLSWYAGQL VGHGDRVLGM ASAVFAGKPV ELSAKIPFMH 180 WWHGAQSRPA EAAAGFYKSG KKNGYSPVAK MFARHGCTMV VPGMDVCMNK QHHSTGSSPD 240 QLLVQIKNAC RRHGARIAGE NASLVMTHTS SFSRIRSNIL TAEFMRPCHF TYQRMGAEFF 300 SPDHFPQFME FVRSVVCGEW DEDDGPWPAD DEDRAMAATE A* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02905 | PLN02905 | 7.0e-56 | 1 | 313 | 319 | + beta-amylase | ||
| PLN02161 | PLN02161 | 3.0e-59 | 1 | 315 | 323 | + beta-amylase | ||
| PLN02801 | PLN02801 | 8.0e-70 | 1 | 313 | 320 | + beta-amylase | ||
| PLN00197 | PLN00197 | 4.0e-71 | 1 | 313 | 317 | + beta-amylase; Provisional | ||
| PLN02803 | PLN02803 | 7.0e-86 | 1 | 315 | 322 | + beta-amylase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0000272 | polysaccharide catabolic process |
| GO:0016161 | beta-amylase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACN35504.1 | 0 | 1 | 339 | 186 | 520 | unknown [Zea mays] |
| GenBank | EAZ05063.1 | 0 | 1 | 337 | 184 | 512 | hypothetical protein OsI_27252 [Oryza sativa Indica Group] |
| GenBank | EAZ41009.1 | 0 | 90 | 337 | 1 | 241 | hypothetical protein OsJ_25494 [Oryza sativa Japonica Group] |
| RefSeq | NP_001060573.1 | 0 | 1 | 337 | 184 | 512 | Os07g0667100 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002463351.1 | 0 | 1 | 339 | 187 | 521 | hypothetical protein SORBIDRAFT_02g042220 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1fa2_A | 0 | 1 | 315 | 126 | 443 | A Chain A, Crystal Structure Of Beta-Amylase From Sweet Potato |
| PDB | 1q6g_A | 0 | 1 | 312 | 125 | 438 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (N340t) With Increased Ph Optimum |
| PDB | 1v3h_A | 0 | 1 | 312 | 125 | 438 | A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction Of Soybean Beta-Amylase |
| PDB | 1q6d_A | 0 | 1 | 312 | 125 | 438 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (M51t) With Increased Ph Optimum |
| PDB | 1wdr_A | 0 | 1 | 312 | 125 | 438 | A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of Soybean Beta-Amylase |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch degradation I | RXN-1827 | EC-3.2.1.2 | β-amylase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
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| Hit | Length | Start | End | EValue |
| EG631213 | 326 | 1 | 326 | 0 |
| EB706242 | 164 | 176 | 339 | 0 |
| HO796964 | 335 | 1 | 335 | 0 |
| HO853900 | 327 | 1 | 324 | 0 |
| HO781436 | 335 | 1 | 335 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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