Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00005661m |
Family | GH17 |
Protein Properties | Length: 285 Molecular Weight: 29332.2 Isoelectric Point: 5.2816 |
Chromosome | Chromosome/Scaffold: 017668 Start: 8753 End: 9799 |
Description | Glycosyl hydrolase family 17 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH17 | 1 | 184 | 0 |
MDVLASSDPPSSGAFKPELDAALDPVLAFLSKTGSPFLINPYPYFAYLSDPRPETLAFCLFQPNAGRPDAGSGLTYTNMLDAMLDAVRAALDAKGYKDVE IVVAETGWPHKGDPDEAGATPENARAFVSGLVSHLRSLAGTPRVPGKSVDTYIFAVYDEDLKPGKGSERYFGLFQTSLTETYPT |
Full Sequence |
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Protein Sequence Length: 285 Download |
MDVLASSDPP SSGAFKPELD AALDPVLAFL SKTGSPFLIN PYPYFAYLSD PRPETLAFCL 60 FQPNAGRPDA GSGLTYTNML DAMLDAVRAA LDAKGYKDVE IVVAETGWPH KGDPDEAGAT 120 PENARAFVSG LVSHLRSLAG TPRVPGKSVD TYIFAVYDED LKPGKGSERY FGLFQTSLTE 180 TYPTGLVRNG TAGLGPAVAP AQAPTSSVQP APALPKPGQQ PQVTPAQQGS AAVAGASSPC 240 APGTATARGA AVACPRHSSA QSSRTFSVLT IIAGLLCPAL QMLI* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 2.0e-7 | 57 | 177 | 124 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam00332 | Glyco_hydro_17 | 4.0e-59 | 1 | 183 | 183 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EEE59830.1 | 0 | 1 | 284 | 160 | 432 | hypothetical protein OsJ_12394 [Oryza sativa Japonica Group] |
RefSeq | NP_001051111.1 | 0 | 1 | 284 | 160 | 448 | Os03g0722500 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001147326.1 | 0 | 1 | 250 | 158 | 408 | LOC100280934 [Zea mays] |
RefSeq | NP_001150853.1 | 0 | 1 | 264 | 159 | 422 | glucan endo-1,3-beta-glucosidase 7 [Zea mays] |
RefSeq | XP_002466550.1 | 0 | 1 | 284 | 160 | 445 | hypothetical protein SORBIDRAFT_01g009770 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3ur8_B | 1e-39 | 3 | 175 | 139 | 303 | B Chain B, X-Ray Crystal Structure Of Ngt-Bound Hexa |
PDB | 3ur8_A | 1e-39 | 3 | 175 | 139 | 303 | B Chain B, X-Ray Crystal Structure Of Ngt-Bound Hexa |
PDB | 3ur7_B | 1e-39 | 3 | 175 | 139 | 303 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 3ur7_A | 1e-39 | 3 | 175 | 139 | 303 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 4gzj_A | 1e-38 | 3 | 175 | 139 | 303 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FE635854 | 224 | 64 | 285 | 0 |
EE038482 | 193 | 1 | 193 | 0 |
HX196037 | 201 | 16 | 216 | 0 |
HX190339 | 201 | 16 | 216 | 0 |
FL802389 | 166 | 59 | 224 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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