Basic Information | |
---|---|
Species | Panicum virgatum |
Cazyme ID | Pavirv00005788m |
Family | PL1 |
Protein Properties | Length: 454 Molecular Weight: 51000.9 Isoelectric Point: 8.9089 |
Chromosome | Chromosome/Scaffold: 017485 Start: 3850 End: 6009 |
Description | Pectate lyase family protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
PL1 | 172 | 372 | 0 |
ITFAKTMIISLKEELIIRGDKTIDGRGVQVRIANGSQLTVQFANNVIIHNIHIHDLVSSNKNGGNIRDSPDHFGWRTVSDGDGITVFGSTNVWLDHLSLS NCQDGLIDVIAKSTGVTISNCHMTNHNDVMLFSSSDSHPEDQIMQITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSKAPTIISQGNRYI A |
Full Sequence |
---|
Protein Sequence Length: 454 Download |
MEAGFQWWSR PGSLVLYVVV VVLSAAVSSE ANIGEFDDYW RQRKLMADAA AEATYKHDPV 60 EVANQLNRAV HRSVEKEEIS VRREMMAQKK KGNKHKGPCL ATNPIDRCWR CRQDWATDRK 120 RLARCAQGFG RNTTGGLAGK FYVVTDGTDE DVVNPRPGTL RWAVIQYEPL WITFAKTMII 180 SLKEELIIRG DKTIDGRGVQ VRIANGSQLT VQFANNVIIH NIHIHDLVSS NKNGGNIRDS 240 PDHFGWRTVS DGDGITVFGS TNVWLDHLSL SNCQDGLIDV IAKSTGVTIS NCHMTNHNDV 300 MLFSSSDSHP EDQIMQITVA FNHFGRGLVQ RMPRCRWGFF HVVNNDYTHW LMYAIGGSKA 360 PTIISQGNRY IAPPNLAAKQ VTKQHDAPES VWKNWVWHSE DDLFMEGAYF TVTGGQINRQ 420 FNKKDLIKPK PGSYVTRLTR FSGSLDCRPG KPC* |
Functional Domains Download unfiltered results here | ||||||
---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
pfam04431 | Pec_lyase_N | 4.0e-13 | 32 | 85 | 54 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. |
COG3866 | PelB | 1.0e-20 | 253 | 368 | 128 | + Pectate lyase [Carbohydrate transport and metabolism] |
pfam00544 | Pec_lyase_C | 2.0e-59 | 183 | 370 | 201 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. |
smart00656 | Amb_all | 4.0e-64 | 178 | 374 | 208 | + Amb_all domain. |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACF87417.1 | 0 | 8 | 453 | 9 | 444 | unknown [Zea mays] |
RefSeq | NP_001057945.1 | 0 | 28 | 453 | 30 | 448 | Os06g0583900 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001150723.1 | 0 | 1 | 453 | 1 | 451 | pectate lyase [Zea mays] |
RefSeq | XP_002437204.1 | 0 | 2 | 453 | 3 | 454 | hypothetical protein SORBIDRAFT_10g022830 [Sorghum bicolor] |
RefSeq | XP_002453531.1 | 0 | 8 | 453 | 10 | 445 | hypothetical protein SORBIDRAFT_04g007450 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 103 | 443 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 103 | 443 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 1e-19 | 122 | 361 | 31 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_B | 0.000000000001 | 183 | 383 | 80 | 299 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_A | 0.000000000001 | 183 | 383 | 80 | 299 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |