Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00005854m |
Family | CE8 |
Protein Properties | Length: 482 Molecular Weight: 50116.3 Isoelectric Point: 8.3996 |
Chromosome | Chromosome/Scaffold: 017960 Start: 6855 End: 8369 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 91 | 388 | 0 |
KVDPSGGGDYATITAALADVPEGNAKRVVLDLKPGAVFREKIFLNLSKPFLTFRSDPMSPATIVWNDTAATTGKDGKPVGTVGSTTVAVESDYFSAHGVV FRNDAPLAKPGAKGGQAVALRVFGTKAAFFNCTIDGGQDTLYDHKGLHYFKDCLIRGSVDFIFGFGRSFYEGCRIESVVKEVAVLTAQQRTKSIEGAIDS GFSFKNCSVGGVKGGQIYLGRAWGDSSRVVYSYTTMGEEVVPIGWDGWNVAKPESSGIYYGEFKCSGPGADAKKKKRVGWSLDLTEEQAKPFVGTHYI |
Full Sequence |
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Protein Sequence Length: 482 Download |
MASNKPLLVV ALAAAAVLLL LLPRQAAAVG PPLVAPGAPG TPGAAFGSWI AANEKSYKTN 60 VALYAMKAAG DGAKVLDANL TAAEEKRVTY KVDPSGGGDY ATITAALADV PEGNAKRVVL 120 DLKPGAVFRE KIFLNLSKPF LTFRSDPMSP ATIVWNDTAA TTGKDGKPVG TVGSTTVAVE 180 SDYFSAHGVV FRNDAPLAKP GAKGGQAVAL RVFGTKAAFF NCTIDGGQDT LYDHKGLHYF 240 KDCLIRGSVD FIFGFGRSFY EGCRIESVVK EVAVLTAQQR TKSIEGAIDS GFSFKNCSVG 300 GVKGGQIYLG RAWGDSSRVV YSYTTMGEEV VPIGWDGWNV AKPESSGIYY GEFKCSGPGA 360 DAKKKKRVGW SLDLTEEQAK PFVGTHYIFG DSWIQQPTAY GSGGGSSSSK GKNTTTAAAE 420 SAGTNTTATK GGAKASSGAT EKDAEEGAST EEEEKTSSSS SATKGSKEEE KTTSVAATKE 480 K* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02634 | PLN02634 | 3.0e-80 | 92 | 394 | 303 | + probable pectinesterase | ||
PLN02304 | PLN02304 | 9.0e-81 | 92 | 395 | 314 | + probable pectinesterase | ||
PLN02671 | PLN02671 | 2.0e-87 | 66 | 395 | 333 | + pectinesterase | ||
PLN02682 | PLN02682 | 2.0e-104 | 89 | 395 | 308 | + pectinesterase family protein | ||
PLN02665 | PLN02665 | 4.0e-109 | 48 | 400 | 354 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACF22736.1 | 0 | 46 | 397 | 31 | 379 | pectinesterase family protein [Brachypodium distachyon] |
GenBank | ACF82787.1 | 0 | 46 | 397 | 39 | 387 | unknown [Zea mays] |
RefSeq | NP_001068464.1 | 0 | 33 | 481 | 31 | 482 | Os11g0683700 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001144148.1 | 0 | 46 | 397 | 39 | 387 | hypothetical protein LOC100277001 [Zea mays] |
RefSeq | XP_002451275.1 | 0 | 42 | 397 | 38 | 395 | hypothetical protein SORBIDRAFT_05g026816 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 5e-33 | 92 | 398 | 11 | 312 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 8e-30 | 92 | 395 | 7 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 3e-18 | 95 | 391 | 13 | 336 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 3e-18 | 95 | 391 | 13 | 336 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 3e-18 | 95 | 391 | 13 | 336 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |