| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00005855m |
| Family | GH1 |
| Protein Properties | Length: 573 Molecular Weight: 65169.1 Isoelectric Point: 6.209 |
| Chromosome | Chromosome/Scaffold: 017960 Start: 2361 End: 5306 |
| Description | Glycosyl hydrolase superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH1 | 109 | 473 | 0 |
| AAWHNVPCPQEWLKFWSDPDTELKLAKETGISVFRMGIDWTRVMPKEPTDAEFKSSVNFAALERYRWIIQRVHEYGMKVMLTLFHHSLPPWAGEYGGWKM EKTVNYFMDFVRLVVDCVSDLVDYWVVFNEPHVFVMLNPNAIEVATSALPTGVYNQALHWMAIAHAEAYDYIHLKSKNGRKPIVGVAHHVSFTRPYGLFD VAAVTLANSLTLFPYIDSICDKLDFIGINYYGQEVISGPGLKFVDNDEYSESGRGVYPDGLFHILIQFNERYKSLNIPFLITENGVSDETDLIRKPYILE HLLAIYAAIIMGVRVLGYLFWTTSDNWEWADGYGPKFGLVAVDRANNLAWEPRPSYYLFSKVVTT | |||
| Full Sequence |
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| Protein Sequence Length: 573 Download |
| DGGFFFGLAT ALAHVEDRLE DAWLQFATEH SCDDKGAMRD HKTADAVMAS AAGDGGAQLA 60 SRSRGEEKAG EGEKRKPLKV AMEAMLRGFE MFSEGGESDS GDNCSHNVAA WHNVPCPQEW 120 LKFWSDPDTE LKLAKETGIS VFRMGIDWTR VMPKEPTDAE FKSSVNFAAL ERYRWIIQRV 180 HEYGMKVMLT LFHHSLPPWA GEYGGWKMEK TVNYFMDFVR LVVDCVSDLV DYWVVFNEPH 240 VFVMLNPNAI EVATSALPTG VYNQALHWMA IAHAEAYDYI HLKSKNGRKP IVGVAHHVSF 300 TRPYGLFDVA AVTLANSLTL FPYIDSICDK LDFIGINYYG QEVISGPGLK FVDNDEYSES 360 GRGVYPDGLF HILIQFNERY KSLNIPFLIT ENGVSDETDL IRKPYILEHL LAIYAAIIMG 420 VRVLGYLFWT TSDNWEWADG YGPKFGLVAV DRANNLAWEP RPSYYLFSKV VTTGKITRQD 480 RLCAWRELQQ AAFQKKTRPF FRAVDKHGRM YAGGLDRPIQ RPFILRDWRF GHYEMEGLQD 540 PFSRFIRSII SPISQKKKIH YIEDDDVSYS IS* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| TIGR01233 | lacG | 2.0e-18 | 117 | 451 | 414 | + 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| PRK13511 | PRK13511 | 1.0e-22 | 130 | 476 | 434 | + 6-phospho-beta-galactosidase; Provisional | ||
| TIGR03356 | BGL | 1.0e-48 | 131 | 451 | 373 | + beta-galactosidase. | ||
| pfam00232 | Glyco_hydro_1 | 6.0e-50 | 128 | 473 | 407 | + Glycosyl hydrolase family 1. | ||
| COG2723 | BglB | 1.0e-59 | 131 | 477 | 404 | + Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACG27984.1 | 0 | 1 | 572 | 68 | 656 | SFR2 [Zea mays] |
| GenBank | ACL54550.1 | 0 | 1 | 572 | 68 | 655 | unknown [Zea mays] |
| GenBank | EAY81793.1 | 0 | 4 | 572 | 69 | 646 | hypothetical protein OsI_36965 [Oryza sativa Indica Group] |
| RefSeq | NP_001068463.1 | 0 | 4 | 572 | 70 | 647 | Os11g0683500 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001105868.1 | 0 | 1 | 572 | 68 | 657 | putative beta-glycosidase [Zea mays] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3apg_D | 4e-39 | 116 | 479 | 51 | 460 | A Chain A, Crystal Structure Of Hyperthermophilic Beta-Glucosidase From Pyrococcus Furiosus |
| PDB | 3apg_C | 4e-39 | 116 | 479 | 51 | 460 | A Chain A, Crystal Structure Of Hyperthermophilic Beta-Glucosidase From Pyrococcus Furiosus |
| PDB | 3apg_B | 4e-39 | 116 | 479 | 51 | 460 | A Chain A, Crystal Structure Of Hyperthermophilic Beta-Glucosidase From Pyrococcus Furiosus |
| PDB | 3apg_A | 4e-39 | 116 | 479 | 51 | 460 | A Chain A, Crystal Structure Of Hyperthermophilic Beta-Glucosidase From Pyrococcus Furiosus |
| PDB | 4ha4_A | 2e-38 | 117 | 479 | 53 | 471 | A Chain A, Crystal Structure Of Hyperthermophilic Beta-Glucosidase From Pyrococcus Furiosus |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| lactose degradation III | BETAGALACTOSID-RXN | EC-3.2.1.23 | β-galactosidase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| GO841008 | 324 | 144 | 457 | 0 |
| GO854499 | 331 | 151 | 471 | 0 |
| GO838679 | 295 | 246 | 540 | 0 |
| GO857923 | 304 | 160 | 453 | 0 |
| GO857923 | 44 | 453 | 495 | 0.52 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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