| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00005884m |
| Family | CE8 |
| Protein Properties | Length: 242 Molecular Weight: 25900.2 Isoelectric Point: 8.193 |
| Chromosome | Chromosome/Scaffold: 0183261 Start: 677 End: 1402 |
| Description | Plant invertase/pectin methylesterase inhibitor superfamily |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CE8 | 1 | 223 | 0 |
| VNGKGFIARDLTFENTAGPAKHQAVALRCDSDLSVFYRCAFEGYQDTLYAHSLRQYYRDCRVTGTVDFVFGNAAAVFQDCLLLARRPLPAQKNSVTAQGR LDANMTTGFAFQFCNVSAHGELLAAASGAGGGGNGTAAAQTYLGRPWKPYSRVVFMQSYIGAAVRPEGWLAWDGEFALDTLFYGEYMNTGPGAGVGARVR WPGFHVMTSPAEAGNFTVAQFIG | |||
| Full Sequence |
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| Protein Sequence Length: 242 Download |
| VNGKGFIARD LTFENTAGPA KHQAVALRCD SDLSVFYRCA FEGYQDTLYA HSLRQYYRDC 60 RVTGTVDFVF GNAAAVFQDC LLLARRPLPA QKNSVTAQGR LDANMTTGFA FQFCNVSAHG 120 ELLAAASGAG GGGNGTAAAQ TYLGRPWKPY SRVVFMQSYI GAAVRPEGWL AWDGEFALDT 180 LFYGEYMNTG PGAGVGARVR WPGFHVMTSP AEAGNFTVAQ FIGGNMWLPP TGVKYTAGLT 240 S* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02484 | PLN02484 | 7.0e-110 | 3 | 240 | 238 | + probable pectinesterase/pectinesterase inhibitor | ||
| PLN02713 | PLN02713 | 3.0e-113 | 1 | 241 | 241 | + Probable pectinesterase/pectinesterase inhibitor | ||
| PLN02301 | PLN02301 | 5.0e-118 | 1 | 239 | 239 | + pectinesterase/pectinesterase inhibitor | ||
| PLN02201 | PLN02201 | 1.0e-135 | 1 | 241 | 241 | + probable pectinesterase/pectinesterase inhibitor | ||
| pfam01095 | Pectinesterase | 4.0e-142 | 1 | 225 | 225 | + Pectinesterase. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EAZ07184.1 | 0 | 1 | 241 | 317 | 560 | hypothetical protein OsI_29430 [Oryza sativa Indica Group] |
| GenBank | EAZ42934.1 | 0 | 7 | 241 | 1 | 235 | hypothetical protein OsJ_27524 [Oryza sativa Japonica Group] |
| RefSeq | NP_001061940.1 | 0 | 1 | 241 | 317 | 557 | Os08g0450100 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001147569.1 | 0 | 1 | 241 | 316 | 559 | pectinesterase PPE8B [Zea mays] |
| RefSeq | XP_002444448.1 | 0 | 1 | 241 | 344 | 584 | hypothetical protein SORBIDRAFT_07g022090 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1xg2_A | 0 | 3 | 239 | 89 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1gq8_A | 0 | 3 | 239 | 93 | 319 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1qjv_B | 0.000000000000004 | 1 | 229 | 93 | 339 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1qjv_A | 0.000000000000004 | 1 | 229 | 93 | 339 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 2ntq_B | 0.000000000000006 | 1 | 229 | 93 | 339 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| FE646646 | 238 | 1 | 238 | 0 |
| DT730044 | 240 | 1 | 240 | 0 |
| DY361529 | 240 | 1 | 240 | 0 |
| DR925008 | 240 | 1 | 240 | 0 |
| DR937739 | 240 | 1 | 240 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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