Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00006056m |
Family | CE8 |
Protein Properties | Length: 255 Molecular Weight: 27364.2 Isoelectric Point: 9.3593 |
Chromosome | Chromosome/Scaffold: 0181307 Start: 284 End: 1323 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 84 | 255 | 0 |
VVDKNPAFGDFTTIQAAIDSLPAINLVRVVIRVNPGTYTEKVTVSPMRAFITLEGAGADSTIVQWGDTADSPTGPKGRPLGTFNSATFAVNAQYFLARNI TFKNTAPVPQPGATGKQAVALRVSADNAAFVGCKFLGAQDTLYDHSGRHYYKECYIEGSVDFIFGNALSLYE |
Full Sequence |
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Protein Sequence Length: 255 Download |
MATPRARFLA CIAVALLAPP CGVAGHSRGL RPGRGGAAAP FPVNATRAEM IERQFVEWVR 60 YMGGLRHSTF QHALARAFPS YSLVVDKNPA FGDFTTIQAA IDSLPAINLV RVVIRVNPGT 120 YTEKVTVSPM RAFITLEGAG ADSTIVQWGD TADSPTGPKG RPLGTFNSAT FAVNAQYFLA 180 RNITFKNTAP VPQPGATGKQ AVALRVSADN AAFVGCKFLG AQDTLYDHSG RHYYKECYIE 240 GSVDFIFGNA LSLYE |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02773 | PLN02773 | 4.0e-53 | 89 | 255 | 170 | + pectinesterase | ||
PLN02665 | PLN02665 | 4.0e-60 | 65 | 254 | 190 | + pectinesterase family protein | ||
PLN02304 | PLN02304 | 7.0e-61 | 83 | 255 | 173 | + probable pectinesterase | ||
PLN02634 | PLN02634 | 1.0e-65 | 83 | 255 | 173 | + probable pectinesterase | ||
PLN02682 | PLN02682 | 1.0e-150 | 5 | 255 | 251 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACN26093.1 | 0 | 1 | 255 | 1 | 272 | unknown [Zea mays] |
GenBank | ACR36293.1 | 0 | 1 | 255 | 1 | 264 | unknown [Zea mays] |
DDBJ | BAD87905.1 | 0 | 1 | 255 | 1 | 257 | pectinesterase-like [Oryza sativa Japonica Group] |
RefSeq | NP_001044216.1 | 0 | 1 | 255 | 1 | 257 | Os01g0743200 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002458469.1 | 0 | 1 | 255 | 1 | 275 | hypothetical protein SORBIDRAFT_03g034250 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 9e-30 | 92 | 250 | 17 | 163 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 8e-24 | 92 | 255 | 13 | 164 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 2e-23 | 81 | 255 | 31 | 213 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 1qjv_B | 9e-16 | 80 | 255 | 3 | 186 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 9e-16 | 80 | 255 | 3 | 186 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |