| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00006057m |
| Family | CBM43 |
| Protein Properties | Length: 468 Molecular Weight: 50320.3 Isoelectric Point: 8.278 |
| Chromosome | Chromosome/Scaffold: 0179500 Start: 468 End: 1961 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| CBM43 | 374 | 460 | 4.4e-22 |
| WCVVRTDRGPANETAVREQVAAACADKAGLCDPVRPGGACYLPNTATAHASYVFSAHWNSFSEDYGGCYFGGLAVETTVDPSHASCK | |||
| GH17 | 24 | 347 | 0 |
| LGVNYGALGDNLPPPHRGIELARSAGAAAVRFYDANATLLAAAAASGLVFVPSVPNELIPSLAASRRAADAWVAAALLPFRRSPGLRYLFVGNEVLSDPT TRSRWPQLVPAMANVERALRRHGLGRVKVSTTFSTHDLDHQNVFPPSAAVFRPDIADAVMRPLLSFLERTESYLFFDAYTYFTWSANHSIVPLPYALLEP SPGFAYHDPGTGLSYANLLDQMLDAVVAAASRIGHCGVRLALAETGWPTAGDLDQFGANVRNAATYNRNLARHLASGAGTPRRPGMRMPAMVFALFNENL KWGPGTERHWGLFYPNGTAVYEVD | |||
| Full Sequence |
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| Protein Sequence Length: 468 Download |
| MSPLHLLLLV LATTTATTPT AHFLGVNYGA LGDNLPPPHR GIELARSAGA AAVRFYDANA 60 TLLAAAAASG LVFVPSVPNE LIPSLAASRR AADAWVAAAL LPFRRSPGLR YLFVGNEVLS 120 DPTTRSRWPQ LVPAMANVER ALRRHGLGRV KVSTTFSTHD LDHQNVFPPS AAVFRPDIAD 180 AVMRPLLSFL ERTESYLFFD AYTYFTWSAN HSIVPLPYAL LEPSPGFAYH DPGTGLSYAN 240 LLDQMLDAVV AAASRIGHCG VRLALAETGW PTAGDLDQFG ANVRNAATYN RNLARHLASG 300 AGTPRRPGMR MPAMVFALFN ENLKWGPGTE RHWGLFYPNG TAVYEVDLTG RRPLASYPPL 360 PPALNDRPYP GRLWCVVRTD RGPANETAVR EQVAAACADK AGLCDPVRPG GACYLPNTAT 420 AHASYVFSAH WNSFSEDYGG CYFGGLAVET TVDPSHASCK IPSILLK* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam07983 | X8 | 1.0e-10 | 373 | 448 | 81 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 2.0e-27 | 373 | 460 | 88 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 6.0e-81 | 24 | 347 | 325 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC76519.1 | 0 | 3 | 464 | 9 | 471 | hypothetical protein OsI_14305 [Oryza sativa Indica Group] |
| GenBank | EEC84834.1 | 0 | 17 | 465 | 24 | 476 | hypothetical protein OsI_31928 [Oryza sativa Indica Group] |
| RefSeq | NP_001051879.1 | 0 | 3 | 464 | 9 | 471 | Os03g0845600 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001063586.1 | 0 | 10 | 465 | 20 | 479 | Os09g0502200 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002463526.1 | 0 | 2 | 467 | 3 | 483 | hypothetical protein SORBIDRAFT_01g001430 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2cyg_A | 0 | 24 | 348 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 1ghs_B | 0 | 24 | 348 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 1ghs_A | 0 | 24 | 348 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 1ghr_A | 0 | 24 | 348 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 1aq0_B | 0 | 24 | 348 | 1 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
