| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00006739m |
| Family | AA4 |
| Protein Properties | Length: 443 Molecular Weight: 48011.3 Isoelectric Point: 6.0193 |
| Chromosome | Chromosome/Scaffold: 046797 Start: 951 End: 5779 |
| Description | FAD-linked oxidases family protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| AA4 | 94 | 332 | 1.6e-26 |
| PQEFIDELASFLGENLTVDYDERSFHGTPQNSFHKAANVPDVVVFPSTQDEVQKIVMACNKYKIPIVPYGGATSIEGHTLAPHGGVCIDMTLMKKIKSLN VEDMDVVVEPGVGWIELNEYLKPYGLFFPLDPGKQSISYLEVKQPWPGATIGGMCATRCSGSLAVRYGTMRDNVINLQAVLPNGDVIKTGSRARKSAAGY DLARLIIGSEGTLGVITEVTLRLQKLPSHSVVAMCNFKT | |||
| Full Sequence |
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| Protein Sequence Length: 443 Download |
| MAASLVRLCR PRRALLPLSS LILPLSTQPQ PTSRASPPSS TSRGLPHFLS FLAAAAAAAA 60 GGATVALCDP GADHRVGGKD STELVVEGEH RRVPQEFIDE LASFLGENLT VDYDERSFHG 120 TPQNSFHKAA NVPDVVVFPS TQDEVQKIVM ACNKYKIPIV PYGGATSIEG HTLAPHGGVC 180 IDMTLMKKIK SLNVEDMDVV VEPGVGWIEL NEYLKPYGLF FPLDPGKQSI SYLEVKQPWP 240 GATIGGMCAT RCSGSLAVRY GTMRDNVINL QAVLPNGDVI KTGSRARKSA AGYDLARLII 300 GSEGTLGVIT EVTLRLQKLP SHSVVAMCNF KTIKDAADVA IATMLFGIQV SRVELLDEVQ 360 IRAINMANGK NLPEVPTLMF EFIGTEAYAL EQTLLVQKIA SEHRGSDFVF VEEPEAKTEL 420 WKIRKEALWA GFAMEPDHEA MIT |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK11230 | PRK11230 | 7.0e-28 | 132 | 441 | 312 | + glycolate oxidase subunit GlcD; Provisional | ||
| pfam01565 | FAD_binding_4 | 3.0e-40 | 133 | 283 | 151 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. | ||
| TIGR00387 | glcD | 7.0e-58 | 136 | 430 | 297 | + glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity [Energy metabolism, Other]. | ||
| COG0277 | GlcD | 1.0e-79 | 100 | 441 | 351 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
| PLN02805 | PLN02805 | 0 | 45 | 443 | 401 | + D-lactate dehydrogenase [cytochrome] | ||
| Gene Ontology | |
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| GO Term | Description |
| GO:0003824 | catalytic activity |
| GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
| GO:0016491 | oxidoreductase activity |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC81560.1 | 0 | 45 | 443 | 53 | 425 | hypothetical protein OsI_24999 [Oryza sativa Indica Group] |
| GenBank | EEE66611.1 | 0 | 67 | 443 | 71 | 422 | hypothetical protein OsJ_23188 [Oryza sativa Japonica Group] |
| RefSeq | NP_001142976.1 | 0 | 1 | 443 | 1 | 431 | hypothetical protein LOC100275430 [Zea mays] |
| RefSeq | XP_002461502.1 | 0 | 1 | 443 | 1 | 450 | hypothetical protein SORBIDRAFT_02g003640 [Sorghum bicolor] |
| RefSeq | XP_002524111.1 | 0 | 37 | 443 | 31 | 431 | d-lactate dehydrogenase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2uuv_D | 7e-24 | 28 | 320 | 32 | 315 | A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity |
| PDB | 2uuv_C | 7e-24 | 28 | 320 | 32 | 315 | A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity |
| PDB | 2uuv_B | 7e-24 | 28 | 320 | 32 | 315 | A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity |
| PDB | 2uuv_A | 7e-24 | 28 | 320 | 32 | 315 | A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity |
| PDB | 2uuu_D | 7e-24 | 28 | 320 | 32 | 315 | A Chain A, Alkyldihydroxyacetonephosphate Synthase In P212121 |
| Metabolic Pathways | |||
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| Pathway Name | Reaction | EC | Protein Name |
| photorespiration | RXN-969 | EC-1.1.3 | glycolate oxidase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| EX265038 | 297 | 147 | 443 | 0 |
| EX440808 | 314 | 109 | 422 | 0 |
| EL444323 | 298 | 77 | 374 | 0 |
| DV512141 | 270 | 45 | 314 | 0 |
| EX262053 | 289 | 148 | 436 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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