| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00007286m |
| Family | PL1 |
| Protein Properties | Length: 321 Molecular Weight: 34083.1 Isoelectric Point: 5.0102 |
| Chromosome | Chromosome/Scaffold: 043925 Start: 4581 End: 5873 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| PL1 | 78 | 282 | 0 |
| WITFARDMTIRPKEELVVSSHKTVDGRGADVVVGDGGACFVLHNVSNVIIHGLAVRGGKPDARTPLASSSASASGGGGLSDGDGITIFRSTDVWVDHCTL EACTDGLIDVTGASTRVTLSNNLLRNHDKAMLLGHSDNFPDDKGMKVTVAFNRFGPGLVQECQEISWCRFGLFHVINNDYINWQIYAIGGSASPTILSHG NRFLA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 321 Download |
| MLADDCGTGN PVDDCWRCES SWAANRQRLA DCAIGFGRDA GGGKNGKTYV VTDPSDDDPV 60 APVPGTLRYG LVQEEPLWIT FARDMTIRPK EELVVSSHKT VDGRGADVVV GDGGACFVLH 120 NVSNVIIHGL AVRGGKPDAR TPLASSSASA SGGGGLSDGD GITIFRSTDV WVDHCTLEAC 180 TDGLIDVTGA STRVTLSNNL LRNHDKAMLL GHSDNFPDDK GMKVTVAFNR FGPGLVQECQ 240 EISWCRFGLF HVINNDYINW QIYAIGGSAS PTILSHGNRF LADKDKEGDM MLNGAFFRSS 300 GSPRPDVDTP SFAKSVSSVA * |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 4.0e-18 | 167 | 316 | 171 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 3.0e-47 | 118 | 280 | 171 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 3.0e-49 | 84 | 282 | 210 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF63756.1 | 0 | 6 | 302 | 46 | 360 | AF243475_1 pectate lyase [Vitis vinifera] |
| DDBJ | BAI94495.1 | 0 | 6 | 301 | 55 | 368 | pectate lyase [Dianthus caryophyllus] |
| GenBank | EAY97390.1 | 0 | 3 | 287 | 34 | 301 | hypothetical protein OsI_19315 [Oryza sativa Indica Group] |
| RefSeq | NP_001055106.1 | 0 | 3 | 319 | 34 | 355 | Os05g0293500 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002268976.1 | 0 | 6 | 297 | 51 | 360 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 10 | 301 | 2 | 313 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 10 | 301 | 2 | 313 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 0.00000000000001 | 85 | 281 | 56 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pcl_A | 0.0000000000008 | 88 | 280 | 71 | 276 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
| PDB | 1vbl_A | 0.000000000001 | 93 | 292 | 128 | 342 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
 | ||||
| Hit | Length | Start | End | EValue |
| FL903996 | 212 | 129 | 320 | 0 |
| FG606120 | 332 | 6 | 314 | 0 |
| DY278910 | 279 | 6 | 280 | 0 |
| JG581707 | 280 | 6 | 281 | 0 |
| DK472540 | 278 | 8 | 285 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
| Phylogeny |
|---|
 |