Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00007299m |
Family | CBM43 |
Protein Properties | Length: 457 Molecular Weight: 47714 Isoelectric Point: 6.2172 |
Chromosome | Chromosome/Scaffold: 045901 Start: 4156 End: 5979 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 207 | 281 | 3.4e-29 |
WCVANAAVGDARLQAALDYACGHGADCGAIQPGVACFEPNTKLAHASYAFNSYYQRSGRASGACDFTGICSATAA | |||
CBM43 | 369 | 450 | 3.4e-31 |
WCVATAGVGEALLQAALDWACGHGADCGAIQPGGACFDPNTKAAHASHAVNSYYQRKGRAAGTCDFAGAASVVYQAPKIGNC | |||
CBM43 | 283 | 363 | 1.7e-31 |
SCVANTAVGDARLQAALDWACGNGADCSAIQPGATCFQPDTKAAHASYAFNNYYQRKGRAAGTCDFAGAASVVYNEPAGTC | |||
GH17 | 2 | 198 | 0 |
SWPPSKGRFRDEIAQPVMKPMLDFLQRTGSYLSVNLFPCLTYTRQLDMNRDFVLGNSNAPGQRDDATGLVYHSLLDAQLDATYFAMEKLGFPNLRVRHTE HGCASGGGLKPGHGGRRLGDGDGGAVPSVANAQAYINNLMDRVASGRTGTPHRPDADMDVYIFALFNENQKGDGPDDIEAHYGLFYPNMEKVYDFQF |
Full Sequence |
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Protein Sequence Length: 457 Download |
VSWPPSKGRF RDEIAQPVMK PMLDFLQRTG SYLSVNLFPC LTYTRQLDMN RDFVLGNSNA 60 PGQRDDATGL VYHSLLDAQL DATYFAMEKL GFPNLRVRHT EHGCASGGGL KPGHGGRRLG 120 DGDGGAVPSV ANAQAYINNL MDRVASGRTG TPHRPDADMD VYIFALFNEN QKGDGPDDIE 180 AHYGLFYPNM EKVYDFQFPG AAAAASWCVA NAAVGDARLQ AALDYACGHG ADCGAIQPGV 240 ACFEPNTKLA HASYAFNSYY QRSGRASGAC DFTGICSATA ASSCVANTAV GDARLQAALD 300 WACGNGADCS AIQPGATCFQ PDTKAAHASY AFNNYYQRKG RAAGTCDFAG AASVVYNEPA 360 GTCDATSSWC VATAGVGEAL LQAALDWACG HGADCGAIQP GGACFDPNTK AAHASHAVNS 420 YYQRKGRAAG TCDFAGAASV VYQAPKIGNC VLPSTA* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 4.0e-22 | 282 | 353 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 1.0e-26 | 214 | 274 | 61 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
smart00768 | X8 | 3.0e-34 | 282 | 363 | 83 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
smart00768 | X8 | 2.0e-34 | 368 | 451 | 84 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 2.0e-36 | 2 | 198 | 199 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACN27897.1 | 0 | 2 | 376 | 31 | 438 | unknown [Zea mays] |
GenBank | ACN27897.1 | 0 | 271 | 456 | 246 | 430 | unknown [Zea mays] |
RefSeq | NP_001151472.1 | 0 | 2 | 376 | 167 | 574 | hydrolase, hydrolyzing O-glycosyl compounds [Zea mays] |
RefSeq | XP_002462968.1 | 0 | 1 | 363 | 167 | 560 | hypothetical protein SORBIDRAFT_02g035490 [Sorghum bicolor] |
RefSeq | XP_002462970.1 | 0 | 2 | 456 | 164 | 661 | hypothetical protein SORBIDRAFT_02g035520 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ghr_A | 1e-25 | 4 | 198 | 137 | 306 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed With Udp-Glucose |
PDB | 1aq0_B | 1e-25 | 4 | 198 | 137 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
PDB | 1aq0_A | 1e-25 | 4 | 198 | 137 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
PDB | 2cyg_A | 4e-24 | 2 | 198 | 139 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 2jon_A | 9e-23 | 359 | 454 | 3 | 98 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FL904873 | 259 | 59 | 304 | 0 |
DR785215 | 279 | 14 | 272 | 0 |
FL904873 | 114 | 278 | 390 | 1.4013e-45 |
FL904873 | 86 | 365 | 450 | 5e-32 |
DR785215 | 78 | 271 | 348 | 2e-25 |
Sequence Alignments (This image is cropped. Click for full image.) |
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