Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00007502m |
Family | GH28 |
Protein Properties | Length: 246 Molecular Weight: 25612.3 Isoelectric Point: 8.4937 |
Chromosome | Chromosome/Scaffold: 044561 Start: 4418 End: 6080 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 48 | 245 | 0 |
KTACGTAGAVTVVVPAGIYHIGPVQFHGPCKASTITFQLQGTLKAATDLKQFGNDWIEFGWVNGLTVAGGTIDGQGAASWPFNKCPVRKDCKVLPTSVLF VNNQNTVVKDLTSVNPKFFHIALLSCKSIKMSGLKISAPSNSPNTDGIHIERSAGVYIMDTHIATGDDCISVGQGNDNVDVARVQCGPGHGMSVGSLG |
Full Sequence |
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Protein Sequence Length: 246 Download |
MEARLALVVV ALLASAPAGG ANIFNAKNYG AKGNGVVDDS KPLMTTWKTA CGTAGAVTVV 60 VPAGIYHIGP VQFHGPCKAS TITFQLQGTL KAATDLKQFG NDWIEFGWVN GLTVAGGTID 120 GQGAASWPFN KCPVRKDCKV LPTSVLFVNN QNTVVKDLTS VNPKFFHIAL LSCKSIKMSG 180 LKISAPSNSP NTDGIHIERS AGVYIMDTHI ATGDDCISVG QGNDNVDVAR VQCGPGHGMS 240 VGSLGR |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 5.0e-43 | 22 | 246 | 227 | + polygalacturonase | ||
PLN02218 | PLN02218 | 1.0e-43 | 28 | 245 | 226 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 3.0e-44 | 23 | 246 | 232 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 8.0e-49 | 66 | 246 | 182 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 1.0e-126 | 23 | 246 | 228 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EEE68484.1 | 0 | 1 | 246 | 1 | 247 | hypothetical protein OsJ_26895 [Oryza sativa Japonica Group] |
RefSeq | NP_001061556.1 | 0 | 1 | 246 | 1 | 265 | Os08g0327200 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002279959.1 | 0 | 10 | 246 | 35 | 275 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002437842.1 | 0 | 25 | 246 | 32 | 253 | hypothetical protein SORBIDRAFT_10g003580 [Sorghum bicolor] |
RefSeq | XP_002444237.1 | 0 | 20 | 246 | 22 | 249 | hypothetical protein SORBIDRAFT_07g016970 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 0.0000001 | 117 | 243 | 117 | 257 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 0.000007 | 58 | 245 | 25 | 205 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.000007 | 58 | 245 | 25 | 205 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.000007 | 58 | 245 | 25 | 205 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.000007 | 58 | 245 | 25 | 205 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |