Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00007521m |
Family | CE8 |
Protein Properties | Length: 324 Molecular Weight: 34860.6 Isoelectric Point: 6.9613 |
Chromosome | Chromosome/Scaffold: 044633 Start: 2676 End: 4134 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 37 | 268 | 0 |
CVDANGCCNFTTVQAAVDAVPPNSQNRSIVWINSGIYFEKVIVKKPNVTFQGQGLKATTIVWNDTANSTHRTPKSASVQIDAPGFVAKNISFKNAAPAPK PGAVGAQAVAIRISGDMAAFWGCGFFGAQDTLLDDQFRHYFKECFIEGSIDFIFGDGRSLYENCKLNSIAEELPQGQHSINGAITAQGRKFPDNDTGFSF VGCTIQGSGNILLGRAWEAYSRVVFAYTYMPA |
Full Sequence |
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Protein Sequence Length: 324 Download |
MLRLGVAAAL VLVFCHFSPS GSTACQLLPS FPPAVFCVDA NGCCNFTTVQ AAVDAVPPNS 60 QNRSIVWINS GIYFEKVIVK KPNVTFQGQG LKATTIVWND TANSTHRTPK SASVQIDAPG 120 FVAKNISFKN AAPAPKPGAV GAQAVAIRIS GDMAAFWGCG FFGAQDTLLD DQFRHYFKEC 180 FIEGSIDFIF GDGRSLYENC KLNSIAEELP QGQHSINGAI TAQGRKFPDN DTGFSFVGCT 240 IQGSGNILLG RAWEAYSRVV FAYTYMPAIY GCRGDGANMA GRVPYARKLD DSQARPFLDQ 300 SYVDGHEWLK PFDDLLIAPV ATP* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02432 | PLN02432 | 2.0e-78 | 38 | 310 | 297 | + putative pectinesterase | ||
PLN02634 | PLN02634 | 1.0e-87 | 35 | 313 | 310 | + probable pectinesterase | ||
PLN02665 | PLN02665 | 3.0e-88 | 33 | 311 | 304 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 4.0e-101 | 31 | 311 | 312 | + pectinesterase family protein | ||
PLN02304 | PLN02304 | 1.0e-140 | 29 | 314 | 316 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EEC83093.1 | 0 | 34 | 318 | 85 | 393 | hypothetical protein OsI_28228 [Oryza sativa Indica Group] |
GenBank | EEE68230.1 | 0 | 34 | 318 | 210 | 518 | hypothetical protein OsJ_26414 [Oryza sativa Japonica Group] |
RefSeq | XP_002267842.1 | 0 | 34 | 312 | 94 | 396 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002445213.1 | 0 | 34 | 318 | 90 | 398 | hypothetical protein SORBIDRAFT_07g006050 [Sorghum bicolor] |
RefSeq | XP_002454459.1 | 0 | 22 | 317 | 36 | 349 | hypothetical protein SORBIDRAFT_04g031450 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 1e-38 | 37 | 310 | 10 | 309 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 4e-31 | 37 | 310 | 6 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 8e-16 | 46 | 202 | 44 | 217 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 1qjv_B | 0.00000000000003 | 34 | 202 | 6 | 190 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 0.00000000000003 | 34 | 202 | 6 | 190 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |