y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00007671m |
Family | GH9 |
Protein Properties | Length: 548 Molecular Weight: 59565.1 Isoelectric Point: 8.7791 |
Chromosome | Chromosome/Scaffold: 047475 Start: 734 End: 3566 |
Description | glycosyl hydrolase 9A1 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH9 | 40 | 516 | 0 |
QYAEALRKALLFFNAQKSGRLPRSNGIPWRGNSGLKDGSDAADVKGGLVGGYYDAGDNIKFHFPMAFSMTLQSWSVVEYSAKYKAVGEYDHVRELIRWGT DYLLRTFNSSASTIGHVYAQVGAAKINGGTPDDHYCWNRPEDMAYPRPSLAVSSAPDLGGEIAAALAAASIAFRDDDAYSKKLAHGAATIYEFATRGASN QQQPTYSSHRPEIEPFYNSTSYWDEHVWCAAWMYYATGNSSYIAAATAPVLAERAGAFDDILDLSVFSWDNKLPGDGLLLSWLRMFLDPGYPYEESLAGY HKAAALDMCKCFRRFAAFNFTRGGLALFNHGRGQPLQYVVANAFLAALYADYLEAVNVPGWNCGPNFMPADDLRAFARSQLDYILGDNPRKMSYVVGYGG RYPRHVHHRGASTPRNRVTYSCTGGRRWRDTKKADPNVLTGAMVGGPDRHDRFNDSRMAFGQTEPTLVGNAGLVAAL |
Full Sequence |
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Protein Sequence Length: 548 Download |
PGAVSVRNMG LAAGFVIVGL PVIVSKSIPR RAPRPPPPDQ YAEALRKALL FFNAQKSGRL 60 PRSNGIPWRG NSGLKDGSDA ADVKGGLVGG YYDAGDNIKF HFPMAFSMTL QSWSVVEYSA 120 KYKAVGEYDH VRELIRWGTD YLLRTFNSSA STIGHVYAQV GAAKINGGTP DDHYCWNRPE 180 DMAYPRPSLA VSSAPDLGGE IAAALAAASI AFRDDDAYSK KLAHGAATIY EFATRGASNQ 240 QQPTYSSHRP EIEPFYNSTS YWDEHVWCAA WMYYATGNSS YIAAATAPVL AERAGAFDDI 300 LDLSVFSWDN KLPGDGLLLS WLRMFLDPGY PYEESLAGYH KAAALDMCKC FRRFAAFNFT 360 RGGLALFNHG RGQPLQYVVA NAFLAALYAD YLEAVNVPGW NCGPNFMPAD DLRAFARSQL 420 DYILGDNPRK MSYVVGYGGR YPRHVHHRGA STPRNRVTYS CTGGRRWRDT KKADPNVLTG 480 AMVGGPDRHD RFNDSRMAFG QTEPTLVGNA GLVAALVAVT SSGRGVGAGA VDRNSMFSAV 540 PPMLYAS* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02171 | PLN02171 | 5.0e-103 | 41 | 505 | 482 | + endoglucanase | ||
PLN02266 | PLN02266 | 1.0e-105 | 41 | 504 | 475 | + endoglucanase | ||
PLN00119 | PLN00119 | 1.0e-107 | 41 | 504 | 474 | + endoglucanase | ||
PLN02345 | PLN02345 | 2.0e-127 | 44 | 505 | 471 | + endoglucanase | ||
pfam00759 | Glyco_hydro_9 | 1.0e-131 | 41 | 505 | 473 | + Glycosyl hydrolase family 9. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACG29946.1 | 0 | 26 | 538 | 96 | 605 | glycoside transferase, six-hairpin, subgroup [Zea mays] |
GenBank | EAY94707.1 | 0 | 39 | 540 | 109 | 625 | hypothetical protein OsI_16485 [Oryza sativa Indica Group] |
RefSeq | NP_001053204.1 | 0 | 39 | 540 | 109 | 607 | Os04g0497200 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001147970.1 | 0 | 26 | 540 | 96 | 607 | glycoside transferase, six-hairpin, subgroup [Zea mays] |
RefSeq | XP_002446733.1 | 0 | 26 | 540 | 97 | 614 | hypothetical protein SORBIDRAFT_06g021440 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ksd_A | 0 | 41 | 523 | 5 | 432 | A Chain A, Crystal Structure Of 1,2-A-L-Fucosidase From Bifidobacterium Bifidum In Complexes With Products |
PDB | 1ksc_A | 0 | 41 | 523 | 5 | 432 | A Chain A, Crystal Structure Of 1,2-A-L-Fucosidase From Bifidobacterium Bifidum In Complexes With Products |
PDB | 1ks8_A | 0 | 41 | 523 | 5 | 432 | A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes Takasagoensis, At Ph 2.5. |
PDB | 2xfg_A | 0 | 33 | 519 | 10 | 459 | B Chain B, Reassembly And Co-Crystallization Of A Family 9 Processive Endoglucanase From Separately Expressed Gh9 And Cbm3c Modules |
PDB | 4tf4_B | 0 | 37 | 522 | 2 | 443 | B Chain B, Reassembly And Co-Crystallization Of A Family 9 Processive Endoglucanase From Separately Expressed Gh9 And Cbm3c Modules |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
BF010444 | 532 | 11 | 540 | 0 |
HO794674 | 534 | 11 | 540 | 0 |
HO796213 | 484 | 62 | 540 | 0 |
HO779161 | 328 | 213 | 540 | 0 |
HO779161 | 163 | 39 | 196 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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