y
Basic Information | |
---|---|
Species | Panicum virgatum |
Cazyme ID | Pavirv00007724m |
Family | GT47 |
Protein Properties | Length: 173 Molecular Weight: 19839 Isoelectric Point: 9.9038 |
Chromosome | Chromosome/Scaffold: 042424 Start: 772 End: 3306 |
Description | Exostosin family protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GT47 | 4 | 110 | 5.1e-35 |
GKIRAKLAKILKGKDGVRFENSLATGGGIKISTEGMQSSKFCLHPAGDTPSSCRLFDAIVSHCVPVIVSSRIELPFEDEIDYSEFSLFFSVEEALRPDYL LNQLRQI |
Full Sequence |
---|
Protein Sequence Length: 173 Download |
MTEGKIRAKL AKILKGKDGV RFENSLATGG GIKISTEGMQ SSKFCLHPAG DTPSSCRLFD 60 AIVSHCVPVI VSSRIELPFE DEIDYSEFSL FFSVEEALRP DYLLNQLRQI SKKKWVEMWL 120 KLKNVSHHYE FQYPPRTGDA VNMIWRQVRH KIPAVNLAIH RNRRLKIPDW WG* 180 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 3.0e-29 | 2 | 110 | 109 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACN31886.1 | 0 | 39 | 172 | 1 | 134 | unknown [Zea mays] |
GenBank | EAY77012.1 | 0 | 3 | 172 | 247 | 416 | hypothetical protein OsI_04969 [Oryza sativa Indica Group] |
RefSeq | NP_001045226.1 | 0 | 3 | 172 | 268 | 437 | Os01g0921300 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001152546.1 | 0 | 3 | 172 | 258 | 427 | exostosin-like [Zea mays] |
RefSeq | XP_002456855.1 | 0 | 3 | 172 | 263 | 432 | hypothetical protein SORBIDRAFT_03g044100 [Sorghum bicolor] |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
JG834359 | 170 | 3 | 172 | 0 |
CD213022 | 171 | 3 | 173 | 0 |
CA070641 | 171 | 3 | 173 | 0 |
FL466914 | 171 | 3 | 173 | 0 |
DT641929 | 171 | 3 | 173 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|