| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00008158m |
| Family | PL4 |
| Protein Properties | Length: 691 Molecular Weight: 76499.3 Isoelectric Point: 6.9609 |
| Chromosome | Chromosome/Scaffold: 042274 Start: 597 End: 4801 |
| Description | Rhamnogalacturonate lyase family protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL4 | 49 | 661 | 0 |
| GVTLRIDRRQVLVDNGVVQVTLSKPQGHITGVRYNGERNLLHYAGEENSGGYWDVVWNYPGSHHPRGMIDMLDSTEFNVVSSSQEQVELSFRSTYNPSRQ DSVRLNVDKRLVVLKGSSGFYCYAIFEHRGSWPAMNISEARLAFKLNTDKFNYMAISDDIQRYMPSTADRDEPHGTPLAYKEAVLLTNPKEPQFKGEVDD KYEYSLDNKDNVVHGWISSSHPNPTGFWVITPSNEFKSGGPMKRELTSHVGPTSLTMFLGTHYIGDDIVLTIGDGEYWKKVLGPVFIYLNSSPKRGDLRA LWDDAKAQAQNEASKWPYSFPKSLDFPKAADRGSVTGRLLVRDRFMSNDDMPAGMAYVGLAAPGQLSSWATECKGYQFWTTADSCGSFTIGNVRAGVYNL YAWVPGVLGDYMYTCHVTVTPGCAIDLGDLVFLPPRSGPTLWEIGVPDRTAAEFFVPDVDPRYANRLFLHKDKYRQYGLWERYAALYPDGDPVFTVGQSD HSKDWFFAHVTRKVGNGYVPTTRQIRFNLDRVVADGTYTLRIALAAAQMSRLQVLVNGGGARRGGIVFTTPEFGGGNAIARHGIHGVQWSFEFPIRGYLL QEDENSISITQTR | |||
| Full Sequence |
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| Protein Sequence Length: 691 Download |
| MAASALGTTR SLLLLVILLI AAAVGEPSSS SLLPLAATTT VNAAANGRGV TLRIDRRQVL 60 VDNGVVQVTL SKPQGHITGV RYNGERNLLH YAGEENSGGY WDVVWNYPGS HHPRGMIDML 120 DSTEFNVVSS SQEQVELSFR STYNPSRQDS VRLNVDKRLV VLKGSSGFYC YAIFEHRGSW 180 PAMNISEARL AFKLNTDKFN YMAISDDIQR YMPSTADRDE PHGTPLAYKE AVLLTNPKEP 240 QFKGEVDDKY EYSLDNKDNV VHGWISSSHP NPTGFWVITP SNEFKSGGPM KRELTSHVGP 300 TSLTMFLGTH YIGDDIVLTI GDGEYWKKVL GPVFIYLNSS PKRGDLRALW DDAKAQAQNE 360 ASKWPYSFPK SLDFPKAADR GSVTGRLLVR DRFMSNDDMP AGMAYVGLAA PGQLSSWATE 420 CKGYQFWTTA DSCGSFTIGN VRAGVYNLYA WVPGVLGDYM YTCHVTVTPG CAIDLGDLVF 480 LPPRSGPTLW EIGVPDRTAA EFFVPDVDPR YANRLFLHKD KYRQYGLWER YAALYPDGDP 540 VFTVGQSDHS KDWFFAHVTR KVGNGYVPTT RQIRFNLDRV VADGTYTLRI ALAAAQMSRL 600 QVLVNGGGAR RGGIVFTTPE FGGGNAIARH GIHGVQWSFE FPIRGYLLQE DENSISITQT 660 RAFGEFLGVM YDYIRLEGPP GSWRDPTRGA * |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd10316 | RGL4_M | 7.0e-31 | 379 | 478 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10317 | RGL4_C | 5.0e-48 | 490 | 677 | 189 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10320 | RGL4_N | 1.0e-62 | 57 | 346 | 293 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| pfam06045 | Rhamnogal_lyase | 9.0e-90 | 47 | 246 | 200 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABA96404.1 | 0 | 47 | 689 | 45 | 701 | LG27/30-like gene, putative, expressed [Oryza sativa (japonica cultivar-group)] |
| DDBJ | BAF29096.2 | 0 | 47 | 679 | 45 | 689 | Os12g0131900 [Oryza sativa Japonica Group] |
| GenBank | EEC68814.1 | 0 | 36 | 689 | 34 | 658 | hypothetical protein OsI_37377 [Oryza sativa Indica Group] |
| RefSeq | NP_001066077.1 | 0 | 47 | 689 | 45 | 688 | Os12g0131900 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002441731.1 | 0 | 2 | 686 | 3 | 719 | hypothetical protein SORBIDRAFT_08g001440 [Sorghum bicolor] |
