| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00008164m |
| Family | CBM43 |
| Protein Properties | Length: 488 Molecular Weight: 51068.6 Isoelectric Point: 7.4458 |
| Chromosome | Chromosome/Scaffold: 043098 Start: 4133 End: 5952 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM43 | 395 | 481 | 4.4e-32 |
| WCVLAGGGKAADEKAVQAALDYACQQGSGTCTAIQPGGACYEPDTLDAHASYAFNSYWQQFRNSGGTCFFNGLAETTTKDPSHGSCK | |||
| GH17 | 48 | 370 | 0 |
| LGVNYGTVADDLPSAARSVQLLRAAGAGAVKIYDANSGILRALAGTGLPVAIMVPNAAIPSLASSRAAAEDWVAANLAPHSPATRVMYLLVGNEVLSDRA IAGSTWRAIVPAMANLHRALRAHGIRKVKLGTTLAMGALSASYPPSAGAFRDDVAEDVVRPLLRFLNATRSFYFVDAYPYFAWAANRDAISLDYALFQGA ASSHYVDPGTGLTYTNLLDQMLDAVVAAMGKLGYGDVKLAVSETGWPSAGDAGEAGANVRNAATYNRNLAARMSRNPGTPARPGAKMPVFLFSLYNEDQK PGAGTERHWGLYYPNQTKVYEID | |||
| Full Sequence |
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| Protein Sequence Length: 488 Download |
| MAAATVAPSS PHRAVAVLLL AAALACHPNV VAAVNPECRC PGGKCRGLGV NYGTVADDLP 60 SAARSVQLLR AAGAGAVKIY DANSGILRAL AGTGLPVAIM VPNAAIPSLA SSRAAAEDWV 120 AANLAPHSPA TRVMYLLVGN EVLSDRAIAG STWRAIVPAM ANLHRALRAH GIRKVKLGTT 180 LAMGALSASY PPSAGAFRDD VAEDVVRPLL RFLNATRSFY FVDAYPYFAW AANRDAISLD 240 YALFQGAASS HYVDPGTGLT YTNLLDQMLD AVVAAMGKLG YGDVKLAVSE TGWPSAGDAG 300 EAGANVRNAA TYNRNLAARM SRNPGTPARP GAKMPVFLFS LYNEDQKPGA GTERHWGLYY 360 PNQTKVYEID LTGQRPSRSY PPLPPADDTD SSPAWCVLAG GGKAADEKAV QAALDYACQQ 420 GSGTCTAIQP GGACYEPDTL DAHASYAFNS YWQQFRNSGG TCFFNGLAET TTKDPSHGSC 480 KFLSSED* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 3.0e-6 | 204 | 362 | 164 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 2.0e-17 | 395 | 468 | 83 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 1.0e-37 | 395 | 482 | 88 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 3.0e-108 | 48 | 370 | 324 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACN29077.1 | 0 | 100 | 487 | 1 | 384 | unknown [Zea mays] |
| DDBJ | BAF24208.2 | 0 | 47 | 476 | 32 | 467 | Os08g0525800 [Oryza sativa Japonica Group] |
| GenBank | EAZ07710.1 | 0 | 47 | 476 | 32 | 467 | hypothetical protein OsI_29967 [Oryza sativa Indica Group] |
| RefSeq | NP_001062294.1 | 0 | 47 | 477 | 32 | 468 | Os08g0525800 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002444717.1 | 0 | 6 | 487 | 1 | 484 | hypothetical protein SORBIDRAFT_07g026540 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2cyg_A | 0 | 48 | 371 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 1ghr_A | 0 | 48 | 371 | 1 | 306 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 1aq0_B | 0 | 48 | 371 | 1 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| PDB | 1aq0_A | 0 | 48 | 371 | 1 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| PDB | 1ghs_B | 0 | 48 | 371 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
