| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00008364m |
| Family | CE8 |
| Protein Properties | Length: 520 Molecular Weight: 55236 Isoelectric Point: 6.6948 |
| Chromosome | Chromosome/Scaffold: 004493 Start: 3 End: 2415 |
| Description | Plant invertase/pectin methylesterase inhibitor superfamily |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| CE8 | 212 | 512 | 0 |
| ATVCAAGCDYKTVREAVAAAPDYGEGPFVVRVKEGVYRETVSVPWEKTNVVLVGDGMGRTVITGDLNADTPGVSTFNTATVGVLADGFMARDLTISNTAG PDAHQAVAFRSTGDRTVLDGVELLGHQDTLYAHAMRHFYTRCRVAGTVDFVFGNSAAVLHATALVVLPRQLRPDKGENDAVTAQGRTDPAQPTGIVLSSC AVNGSDEYMALYRQNPDAHRVYLGRPWKEYSRTVYLRCTLAEIVQPQGWMPWKDDFALSTLYYGEFGSAGPGAAAGRRVAWSSQVPEDHVDAYSVANFIQ G | |||
| Full Sequence |
|---|
| Protein Sequence Length: 520 Download |
| SRHHHHRSTP SPSPAAAPAS SGSAPLAVLL ACNATRFQPA CVATLSGAGS DASASDLLGA 60 TLTALRARIP PAVSTAKSVL AASSNVNLSN AATNCLTFLS LSSRRLAPSP APSLLSASTA 120 LLHLYDCWSA YKYVNFSRAI SDAMAYLDET ISVNSNYISM LAARQRYGDE TSLWRPPQTE 180 RDGYWPPAAA ASKEAEPDVD ALGVPRGLPA NATVCAAGCD YKTVREAVAA APDYGEGPFV 240 VRVKEGVYRE TVSVPWEKTN VVLVGDGMGR TVITGDLNAD TPGVSTFNTA TVGVLADGFM 300 ARDLTISNTA GPDAHQAVAF RSTGDRTVLD GVELLGHQDT LYAHAMRHFY TRCRVAGTVD 360 FVFGNSAAVL HATALVVLPR QLRPDKGEND AVTAQGRTDP AQPTGIVLSS CAVNGSDEYM 420 ALYRQNPDAH RVYLGRPWKE YSRTVYLRCT LAEIVQPQGW MPWKDDFALS TLYYGEFGSA 480 GPGAAAGRRV AWSSQVPEDH VDAYSVANFI QGHEWIPKA* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02201 | PLN02201 | 3.0e-87 | 207 | 517 | 322 | + probable pectinesterase/pectinesterase inhibitor | ||
| PLN02713 | PLN02713 | 1.0e-88 | 220 | 518 | 308 | + Probable pectinesterase/pectinesterase inhibitor | ||
| PLN02301 | PLN02301 | 4.0e-91 | 205 | 516 | 316 | + pectinesterase/pectinesterase inhibitor | ||
| pfam01095 | Pectinesterase | 3.0e-125 | 211 | 512 | 306 | + Pectinesterase. | ||
| PLN02708 | PLN02708 | 0 | 1 | 518 | 532 | + Probable pectinesterase/pectinesterase inhibitor | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EAY76707.1 | 0 | 11 | 518 | 29 | 538 | hypothetical protein OsI_04662 [Oryza sativa Indica Group] |
| RefSeq | NP_001044992.1 | 0 | 11 | 518 | 29 | 538 | Os01g0880300 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002281640.1 | 0 | 3 | 517 | 23 | 552 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002458861.1 | 0 | 1 | 518 | 24 | 505 | hypothetical protein SORBIDRAFT_03g041680 [Sorghum bicolor] |
| RefSeq | XP_002517239.1 | 0 | 1 | 519 | 23 | 551 | Pectinesterase-2 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 211 | 516 | 8 | 308 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 0 | 208 | 516 | 1 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1qjv_B | 2e-21 | 211 | 488 | 5 | 315 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1qjv_A | 2e-21 | 211 | 488 | 5 | 315 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 2ntq_B | 5e-21 | 211 | 438 | 5 | 245 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
 | ||||
| Hit | Length | Start | End | EValue |
| EC888853 | 289 | 232 | 520 | 0 |
| FL694762 | 233 | 232 | 464 | 0 |
| EE289607 | 259 | 232 | 490 | 0 |
| EC899075 | 246 | 232 | 477 | 0 |
| FL783873 | 233 | 266 | 498 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
