| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00008373m |
| Family | CBM57 |
| Protein Properties | Length: 639 Molecular Weight: 70095.7 Isoelectric Point: 7.1121 |
| Chromosome | Chromosome/Scaffold: 005471 Start: 3517 End: 8942 |
| Description | receptor like protein 4 |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| CBM57 | 214 | 371 | 2.4e-26 |
| GKPAFDEDLHGISWGGDRFWLGLQTLSSSSDDQSISTENVIAETLLAPNFYPQSLYQSAIVGTDRQPSLSFEMDVTPNKNYSVWLHFAEIDNGVTAEEQR VFDVLINGDTAFKDVDIIRMTGERFTALVLNKTVAVSGTTLKIILQPVKGTRAIISAI | |||
| Full Sequence |
|---|
| Protein Sequence Length: 639 Download |
| MRQRSPAVLQ LRLWLLAVSV WPAFLGVLAA DLSKEPFTIR ISCGSFDDVR TSPTNTLWYR 60 DFGYTGGRFA NATRPSFIIP PLKTLRYFPL SDGPENCYNI NNVPNGHYQV RLFFSLLDNP 120 SLDSEPIFDV SVEGTLFSSL LLGWSSDDEK TFAEALVFVQ DSRLSVCFHS TGHGDPSILS 180 IEVLQIDDNS YNFSPSWGKG TVLRTAKRLK CGSGKPAFDE DLHGISWGGD RFWLGLQTLS 240 SSSDDQSIST ENVIAETLLA PNFYPQSLYQ SAIVGTDRQP SLSFEMDVTP NKNYSVWLHF 300 AEIDNGVTAE EQRVFDVLIN GDTAFKDVDI IRMTGERFTA LVLNKTVAVS GTTLKIILQP 360 VKGTRAIISA IEVFEVIPAE KKTLPQEVSA LRTLKGSLGL PLRFGWNGDP CVPQQHPWSG 420 VDCQFDNTKG NWIIDGLGLD NQGLRGVIPG DISKLQHLQS INLSGNSIKG NIPTSIGTIS 480 ALQVLDLSYN ELNGSIPDSL GHLTSLLILN LNGNRLSGRV PANLGGRPLH RARFNFTDNA 540 GLCGIPGLGE CGPHLSVAAK IGMAFGVLLA ILFLVVFAAC WWKRRQNILR AQKLAAAREA 600 PYAKSRTQFT RDVQMTKHQR LSESSRNSNN ESSPHLLS* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam11721 | Malectin | 5.0e-5 | 40 | 181 | 158 | + Di-glucose binding within endoplasmic reticulum. Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan. | ||
| PLN00113 | PLN00113 | 4.0e-14 | 434 | 526 | 93 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
| pfam11721 | Malectin | 3.0e-14 | 208 | 371 | 176 | + Di-glucose binding within endoplasmic reticulum. Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan. | ||
| pfam12819 | Malectin_like | 7.0e-68 | 41 | 376 | 354 | + Carbohydrate-binding protein of the ER. Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. The domain is found on a number of plant receptor kinases. | ||
| PLN03150 | PLN03150 | 0 | 11 | 638 | 628 | + hypothetical protein; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005515 | protein binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI30598.1 | 0 | 36 | 638 | 24 | 624 | unnamed protein product [Vitis vinifera] |
| GenBank | EAZ39920.1 | 0 | 23 | 637 | 22 | 591 | hypothetical protein OsJ_24359 [Oryza sativa Japonica Group] |
| RefSeq | NP_001059721.1 | 0 | 23 | 637 | 22 | 636 | Os07g0501800 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002279791.1 | 0 | 39 | 638 | 1 | 600 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002462899.1 | 0 | 1 | 638 | 1 | 639 | hypothetical protein SORBIDRAFT_02g034070 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3rgz_A | 0.0000000000004 | 409 | 553 | 611 | 750 | A Chain A, Crystal Structure Of A Mammalian Sialyltransferase |
| PDB | 3rgz_A | 0.000000008 | 434 | 522 | 468 | 556 | A Chain A, Crystal Structure Of A Mammalian Sialyltransferase |
| PDB | 3rgz_A | 0.00000001 | 437 | 524 | 399 | 486 | A Chain A, Crystal Structure Of A Mammalian Sialyltransferase |
| PDB | 3rgz_A | 0.00002 | 428 | 500 | 490 | 558 | A Chain A, Crystal Structure Of A Mammalian Sialyltransferase |
| PDB | 3rgz_A | 0.00005 | 458 | 551 | 396 | 489 | A Chain A, Crystal Structure Of A Mammalian Sialyltransferase |
