| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00008464m |
| Family | CE8 |
| Protein Properties | Length: 420 Molecular Weight: 45491.5 Isoelectric Point: 8.8605 |
| Chromosome | Chromosome/Scaffold: 004041 Start: 2 End: 1541 |
| Description | Plant invertase/pectin methylesterase inhibitor superfamily |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CE8 | 120 | 413 | 0 |
| CAYSTVQAAVDAAPNYTAGHFVIAVAAGSYKENVIIPYEKTNILLVGEGVGATVITASRSVGIDGLGTFDTATVSVIGDGFRARDITFENNAGAGAHQAV AFQSDSDRSVLENVEFRGHQDTLYARTMRQLYRRCHIIGTVDFIFGNAAAVFEECVIKTVPRAEGARKSARNVVAANGRIDLGQTTGFVFMNCTVDGNKE FAELFQTKPQSYRLYLGRPWKEYARTIYVSCYLGKVIRPEGWLPWRGDFAVRTLYYGEFDSRGPGANHTARVEWSNQTTEKHVKLYSVENFIQG | |||
| Full Sequence |
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| Protein Sequence Length: 420 Download |
| RAAVAAHPSP AAYGRPCADH LALSLRRLRA ALASLEAGDV PAALHLASAS LQCQYDCSHL 60 LSLPAFRSHP LTSRFLNSLS PPSLTAATKP FSAAASAPAF PARIRPDATV CKPNPGAKPC 120 AYSTVQAAVD AAPNYTAGHF VIAVAAGSYK ENVIIPYEKT NILLVGEGVG ATVITASRSV 180 GIDGLGTFDT ATVSVIGDGF RARDITFENN AGAGAHQAVA FQSDSDRSVL ENVEFRGHQD 240 TLYARTMRQL YRRCHIIGTV DFIFGNAAAV FEECVIKTVP RAEGARKSAR NVVAANGRID 300 LGQTTGFVFM NCTVDGNKEF AELFQTKPQS YRLYLGRPWK EYARTIYVSC YLGKVIRPEG 360 WLPWRGDFAV RTLYYGEFDS RGPGANHTAR VEWSNQTTEK HVKLYSVENF IQGYQWIAY* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02745 | PLN02745 | 1.0e-94 | 103 | 417 | 318 | + Putative pectinesterase/pectinesterase inhibitor | ||
| PLN02301 | PLN02301 | 6.0e-96 | 104 | 417 | 317 | + pectinesterase/pectinesterase inhibitor | ||
| PLN02201 | PLN02201 | 2.0e-98 | 104 | 417 | 319 | + probable pectinesterase/pectinesterase inhibitor | ||
| pfam01095 | Pectinesterase | 5.0e-127 | 107 | 413 | 313 | + Pectinesterase. | ||
| PLN02708 | PLN02708 | 6.0e-151 | 104 | 417 | 315 | + Probable pectinesterase/pectinesterase inhibitor | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAE02750.2 | 0 | 1 | 419 | 58 | 480 | OSJNBa0006B20.19 [Oryza sativa (japonica cultivar-group)] |
| EMBL | CAH67582.1 | 0 | 1 | 419 | 56 | 478 | H0315A08.12 [Oryza sativa (indica cultivar-group)] |
| GenBank | EAY94221.1 | 0 | 1 | 419 | 58 | 480 | hypothetical protein OsI_15995 [Oryza sativa Indica Group] |
| RefSeq | NP_001140854.1 | 0 | 2 | 419 | 52 | 471 | hypothetical protein LOC100272930 [Zea mays] |
| RefSeq | XP_002446513.1 | 0 | 1 | 419 | 51 | 468 | hypothetical protein SORBIDRAFT_06g017280 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1xg2_A | 0 | 122 | 417 | 15 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1gq8_A | 0 | 122 | 417 | 19 | 308 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1qjv_B | 0.000000000000004 | 107 | 339 | 5 | 245 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1qjv_A | 0.000000000000004 | 107 | 339 | 5 | 245 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 2ntq_B | 0.000000000000004 | 107 | 339 | 5 | 245 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
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| Hit | Length | Start | End | EValue |
| FL760482 | 254 | 167 | 420 | 0 |
| FL811362 | 205 | 13 | 217 | 0 |
| EL684347 | 259 | 159 | 417 | 0 |
| EC888853 | 285 | 133 | 417 | 0 |
| FL811362 | 27 | 212 | 238 | 0.002 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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