Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00008674m |
Family | GH3 |
Protein Properties | Length: 762 Molecular Weight: 81350.1 Isoelectric Point: 7.1295 |
Chromosome | Chromosome/Scaffold: 004733 Start: 3982 End: 8503 |
Description | Glycosyl hydrolase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH3 | 61 | 314 | 0 |
AGVPRLGVPPYKYWSEGLHGLAFWGHGLRFDGTVRGVTSFPQVLLTAASFDEGLWFRIGQAIAREARALYNLGQAEGLTIWSPNVNIFRDPRWGRGQETP GEDPATAGKYAVAFVRGIQGSSPAGGGGAPLQASACCKHATSYDLEDWNGVQRYNFDARVTARDLADTFNPPFRSCVVDGGATCVMCAYTAVNGVPACAS SDLLTRTFRGDWGLDGYVASDCDAVAIMRDAQRYAPTPEDTVAVALKAGLDLNC |
Full Sequence |
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Protein Sequence Length: 762 Download |
MLSSSAARAA AADPGFSCGL SSPSRSLPFC DRSLPAAQRA ADLVSRMMVA EKVSQMGDEA 60 AGVPRLGVPP YKYWSEGLHG LAFWGHGLRF DGTVRGVTSF PQVLLTAASF DEGLWFRIGQ 120 AIAREARALY NLGQAEGLTI WSPNVNIFRD PRWGRGQETP GEDPATAGKY AVAFVRGIQG 180 SSPAGGGGAP LQASACCKHA TSYDLEDWNG VQRYNFDARV TARDLADTFN PPFRSCVVDG 240 GATCVMCAYT AVNGVPACAS SDLLTRTFRG DWGLDGYVAS DCDAVAIMRD AQRYAPTPED 300 TVAVALKAGL DLNCGNYTQE HGMAAIRQGK MMEKDVDKAL TNLFAVRMRL GHFDGDPRGS 360 APYGGLGAAD VCTAEHKSLA LEAAQDGIVL LKNDAGILPL DRSAVGSAAV IGHNANNPLV 420 LSGNYFGPAC ETTTPLKGLQ GYVKNVRFLA GCDSAACGFA ATGQAAALAR SSEFVFLFMG 480 LSQDQEKEGL DRTSLLLPGK QQSLITAVAS AAKRPVILVL LTGGPVDITF AQSNPKIGAI 540 LWAGYPGQAG GLAIARVLFG DHNPSGRLPV TWYPEDFTKV PMTDMRMRAD PATGYPGRSY 600 RFYTGKTVYK FGYGLSYSKF SRRLIAGGRN PVPNTSLLAG LPATSKDTTV SYYHVDDIGA 660 DGCEQLKFPA EVEVENHGPM DGKHSVLMFL RWPNATDGRP SSQLIGFRSQ HLKAGEKANV 720 RIDVSPCEHF SRAREDGRMV IDRGSHFLMV GRDEWEISFE A* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG1472 | BglX | 3.0e-50 | 59 | 418 | 369 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
pfam01915 | Glyco_hydro_3_C | 6.0e-55 | 388 | 618 | 237 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
pfam00933 | Glyco_hydro_3 | 1.0e-57 | 60 | 346 | 291 | + Glycosyl hydrolase family 3 N terminal domain. | ||
PRK15098 | PRK15098 | 1.0e-65 | 55 | 726 | 731 | + beta-D-glucoside glucohydrolase; Provisional | ||
PLN03080 | PLN03080 | 0 | 14 | 761 | 760 | + Probable beta-xylosidase; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAX92971.1 | 0 | 13 | 761 | 24 | 771 | beta-D-xylosidase [Oryza sativa Japonica Group] |
GenBank | EAY80660.1 | 0 | 13 | 761 | 24 | 771 | hypothetical protein OsI_35838 [Oryza sativa Indica Group] |
RefSeq | NP_001067726.1 | 0 | 14 | 761 | 35 | 782 | Os11g0297800 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002489304.1 | 0 | 9 | 761 | 12 | 750 | hypothetical protein SORBIDRAFT_0010s007570 [Sorghum bicolor] |
RefSeq | XP_002489310.1 | 0 | 5 | 761 | 17 | 772 | hypothetical protein SORBIDRAFT_0010s010920 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3u48_B | 0 | 98 | 751 | 91 | 722 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 |
PDB | 3u48_A | 0 | 98 | 751 | 91 | 722 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 |
PDB | 3u4a_B | 0 | 98 | 751 | 91 | 722 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 |
PDB | 3u4a_A | 0 | 98 | 751 | 91 | 722 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 |
PDB | 2x41_A | 5e-36 | 59 | 724 | 42 | 674 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.37-RXN | EC-3.2.1.37 | xylan 1,4-β-xylosidase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FL885827 | 248 | 470 | 717 | 0 |
FL874091 | 257 | 77 | 333 | 0 |
FL821096 | 260 | 475 | 734 | 0 |
FL725997 | 245 | 488 | 732 | 0 |
FL893595 | 245 | 473 | 717 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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