| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00009007m |
| Family | CBM53 |
| Protein Properties | Length: 1127 Molecular Weight: 127469 Isoelectric Point: 4.5668 |
| Chromosome | Chromosome/Scaffold: 005765 Start: 3483 End: 9655 |
| Description | starch synthase 3 |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM53 | 640 | 723 | 4.5e-32 |
| STIDLYFNRDLSTLANEPDILIKGAFNGWKWRFFTEKLHMSELGGDWWCCKLYIPKQAYRLDFVFFNGFTVYENNGNNDFMIQI | |||
| CBM53 | 815 | 902 | 1.2e-33 |
| AAVRLYYNRNSRPLVRSTEIWMHGGYNNWIDGLSFSERLVHVDYKDGDWWYADVVLPERIYVLDWVFADGPPGNARNYDNNARQDFHA | |||
| CBM53 | 976 | 1064 | 7.3e-34 |
| GNTVDVLYNPSNTVLTGKPEVWFQCSFNRWMHPGGVLPPQKMVTAGNGAHLKATVNVPRDAYMMDFVFSELEGDGIYDNRNGLDYHIPV | |||
| Full Sequence |
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| Protein Sequence Length: 1127 Download |
| MSMMLRPQSL ICPLSDQALV IRPAFVGPAQ ALFRTSRCAI SRLIRCPVAS SDRPSRKSRR 60 MVYPKIKVNA FRGYAQKVTI ESSTKKSEQR GCDEETIGTY NRQLSTDVVE STSGTGAEIA 120 KEDLLHNASR YPIFREIEEA GLDFFEAELP GNALINISLG ELEVVDEAEV EEDKFEVDFS 180 GTALSNEANT KEDIFVVDLS RIASDSVVVG EVVDEAEAIH ETFIAESSGN ASSSGINGHV 240 DEVGEPRADQ EVTFEMDVSR LGELNVVDHA KVGTNIFEMD FLSSSSGKAM YIAAECSEEN 300 LAKGENEQGQ CSALPSTSME DNAIDSPENS KSLQEQHNLV FSVEKEEGST IDSCVEDQPV 360 VDYHKQGGNV AYFDKQKLLT YGFCEHDLSI VQFPEQNHAI FGFPKQDISF LEQKQAIVGS 420 YKQDLSIVNS HEQDRSVDGS HCQDESIVGV PEPIQCIKIQ SIIAYSTSDQ SIVDFPKQHQ 480 SIVHIPEQKQ SIVGFHIQDI PIIGNSKDSQ TKQHAIVRTH DALLTEEENF EMIEEQKSVR 540 VDEEQWIATK ERSSMNEAEF LLLLSKKESS WAEDGVGITE DKEHCKVDET SMFAEQDIQE 600 LPHDNVDPQA LQRTLQELAQ KNYSLGSKLF AFPEVLKADS TIDLYFNRDL STLANEPDIL 660 IKGAFNGWKW RFFTEKLHMS ELGGDWWCCK LYIPKQAYRL DFVFFNGFTV YENNGNNDFM 720 IQIENTMDEH LFEGFLVEEK KRELERLAIE EAERMRQAEE QRRKAEERAE DEADMAQAKV 780 EVEMKKNKLH NVLGLARPSV DNLWYIEPVL TGQGAAVRLY YNRNSRPLVR STEIWMHGGY 840 NNWIDGLSFS ERLVHVDYKD GDWWYADVVL PERIYVLDWV FADGPPGNAR NYDNNARQDF 900 HAILLNNMTE EEYWAEEEQW TYTRLQQDRR EREETSKRKA ERTAKLKAEM KKKTMKMFLV 960 SQKHIVYTEP LEIHAGNTVD VLYNPSNTVL TGKPEVWFQC SFNRWMHPGG VLPPQKMVTA 1020 GNGAHLKATV NVPRDAYMMD FVFSELEGDG IYDNRNGLDY HIPVFGSVAK EPPMHIVHIA 1080 VEMAPIAKVG GLADVVTSLS RAVQDLGHNV EVILPKHDCL NLNNVS* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02316 | PLN02316 | 1.0e-5 | 61 | 155 | 95 | + synthase/transferase | ||
| PLN02316 | PLN02316 | 1.0e-19 | 483 | 901 | 431 | + synthase/transferase | ||
| PLN02316 | PLN02316 | 1.0e-19 | 779 | 1071 | 319 | + synthase/transferase | ||
| pfam03423 | CBM_25 | 4.0e-33 | 976 | 1064 | 89 | + Carbohydrate binding domain (family 25). | ||
| PLN02316 | PLN02316 | 0 | 609 | 1125 | 517 | + synthase/transferase | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF88000.1 | 0 | 1 | 1125 | 1 | 1214 | starch synthase III [Aegilops tauschii] |
| GenBank | ACC86846.1 | 0 | 1 | 1125 | 1 | 1287 | starch synthase IIIa precursor [Sorghum bicolor] |
| GenBank | EEC83025.1 | 0 | 141 | 1125 | 425 | 1389 | hypothetical protein OsI_28103 [Oryza sativa Indica Group] |
| RefSeq | NP_001104881.1 | 0 | 1 | 1125 | 1 | 1277 | starch synthase DULL1 [Zea mays] |
| RefSeq | XP_002443985.1 | 0 | 1 | 1125 | 1 | 1267 | hypothetical protein SORBIDRAFT_07g005400 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2bis_C | 0.008 | 1074 | 1117 | 4 | 46 | A Chain A, Structure Of Glycogen Synthase From Pyrococcus Abyssi |
| PDB | 2bis_B | 0.008 | 1074 | 1117 | 4 | 46 | A Chain A, Structure Of Glycogen Synthase From Pyrococcus Abyssi |
| PDB | 2bis_A | 0.008 | 1074 | 1117 | 4 | 46 | A Chain A, Structure Of Glycogen Synthase From Pyrococcus Abyssi |
| PDB | 3fro_C | 0.008 | 1074 | 1117 | 3 | 45 | A Chain A, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase With Open And Closed Conformations |
| PDB | 3fro_B | 0.008 | 1074 | 1117 | 3 | 45 | A Chain A, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase With Open And Closed Conformations |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| HO778003 | 514 | 612 | 1125 | 0 |
| FL776797 | 277 | 589 | 865 | 0 |
| HO778003 | 306 | 606 | 901 | 0.000000000005 |
| FL776797 | 230 | 808 | 1018 | 0.000000002 |
| FL776797 | 128 | 966 | 1084 | 0.5 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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