| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00009008m |
| Family | GT5 |
| Protein Properties | Length: 362 Molecular Weight: 40408.8 Isoelectric Point: 7.8551 |
| Chromosome | Chromosome/Scaffold: 005765 Start: 12344 End: 15090 |
| Description | starch synthase 3 |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT5 | 5 | 356 | 0 |
| GCVYGRNDDRRFGFFCHSALEFLLQSGSSPNIIHCHDWSSAPTAWLYKENYAQSSLANARVIFTIHNLEFGPHYIGKAMKYCDKATTVSNTYSREVSGHG DIAPHLGKFYGILNGIDPDIWDPYSDSFIPVHYTPENVVKGKAAAKRALQQKLGLQQNDVPIVGIISRLTAQKGIHLIKHAMRRTLERNGQVVLLGSAPD PRIQGDFANLANTLQGENHGRVKMCLTYDEPLSHLIYAGSDFILVPSIFEPCGLTQLVAMRYGAIPIVRKTGGLYDTVFDVDNDKERARARGLEPNGFSF DGADNNGVDYALNRAISAWFDARGWFHSLCKRVMEQDWSWNRPALDYIELYR | |||
| Full Sequence |
|---|
| Protein Sequence Length: 362 Download |
| MFGVGCVYGR NDDRRFGFFC HSALEFLLQS GSSPNIIHCH DWSSAPTAWL YKENYAQSSL 60 ANARVIFTIH NLEFGPHYIG KAMKYCDKAT TVSNTYSREV SGHGDIAPHL GKFYGILNGI 120 DPDIWDPYSD SFIPVHYTPE NVVKGKAAAK RALQQKLGLQ QNDVPIVGII SRLTAQKGIH 180 LIKHAMRRTL ERNGQVVLLG SAPDPRIQGD FANLANTLQG ENHGRVKMCL TYDEPLSHLI 240 YAGSDFILVP SIFEPCGLTQ LVAMRYGAIP IVRKTGGLYD TVFDVDNDKE RARARGLEPN 300 GFSFDGADNN GVDYALNRAI SAWFDARGWF HSLCKRVMEQ DWSWNRPALD YIELYRSASK 360 L* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02939 | PLN02939 | 5.0e-108 | 2 | 358 | 396 | + transferase, transferring glycosyl groups | ||
| TIGR02095 | glgA | 2.0e-121 | 4 | 358 | 393 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| PRK00654 | glgA | 6.0e-127 | 2 | 358 | 393 | + glycogen synthase; Provisional | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 6.0e-138 | 6 | 357 | 389 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| PLN02316 | PLN02316 | 0 | 1 | 360 | 361 | + synthase/transferase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM49811.1 | 0 | 1 | 361 | 1193 | 1553 | putative soluble starch synthase III-2 [Oryza sativa Indica Group] |
| GenBank | ACC86846.1 | 0 | 1 | 361 | 1324 | 1684 | starch synthase IIIa precursor [Sorghum bicolor] |
| GenBank | ACY56226.1 | 0 | 1 | 361 | 1193 | 1553 | soluble starch synthase III-2 [Oryza sativa Japonica Group] |
| RefSeq | NP_001104881.1 | 0 | 1 | 361 | 1314 | 1674 | starch synthase DULL1 [Zea mays] |
| RefSeq | XP_002443985.1 | 0 | 1 | 361 | 1304 | 1664 | hypothetical protein SORBIDRAFT_07g005400 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3d1j_A | 0 | 34 | 355 | 130 | 473 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 3guh_A | 0 | 34 | 355 | 130 | 473 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4u_A | 0 | 34 | 355 | 130 | 473 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4t_A | 0 | 34 | 355 | 130 | 473 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2qzs_A | 0 | 34 | 355 | 130 | 473 | A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO794758 | 362 | 1 | 361 | 0 |
| CD437215 | 300 | 62 | 361 | 0 |
| GT033751 | 305 | 1 | 305 | 0 |
| HO651392 | 361 | 1 | 360 | 0 |
| CO443619 | 269 | 62 | 330 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
