Basic Information | |
---|---|
Species | Panicum virgatum |
Cazyme ID | Pavirv00009026m |
Family | GH17 |
Protein Properties | Length: 404 Molecular Weight: 43190.5 Isoelectric Point: 6.7803 |
Chromosome | Chromosome/Scaffold: 005674 Start: 12129 End: 15359 |
Description | Glycosyl hydrolase superfamily protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH17 | 35 | 353 | 0 |
LGINYGQVGNNLPSPPQVVQLLSSLRIGKVRIYDVNPQVLSAFAGTGIELIVTVPDDLVLGMAASASQALQWLAAGVRPYFPATRVTGIAVGNEVFTGGD EQLKASLVPAMRNLHAALAQLGMDAYVRVSTANSLAVLATSYPPSQGVFTQDAAPYMAQLLRFLADTSAPFWINAYPYFAYKDDPTKVSLDYALSDPSHV GAVDPDTRLQYTSMLYAQVDAVTFAAARLGYGNVPVHVSETGWPSKGDANEVGATVENARQYNRNLLMRQISGEGTPLRPKLRLEVYLFALFNEDMKPGP TSERNYGLYQPDMSMVYNV |
Full Sequence |
---|
Protein Sequence Length: 404 Download |
MAAALLSKSP RLVVCAVLCI FLFSEVGVPR RAAALGINYG QVGNNLPSPP QVVQLLSSLR 60 IGKVRIYDVN PQVLSAFAGT GIELIVTVPD DLVLGMAASA SQALQWLAAG VRPYFPATRV 120 TGIAVGNEVF TGGDEQLKAS LVPAMRNLHA ALAQLGMDAY VRVSTANSLA VLATSYPPSQ 180 GVFTQDAAPY MAQLLRFLAD TSAPFWINAY PYFAYKDDPT KVSLDYALSD PSHVGAVDPD 240 TRLQYTSMLY AQVDAVTFAA ARLGYGNVPV HVSETGWPSK GDANEVGATV ENARQYNRNL 300 LMRQISGEGT PLRPKLRLEV YLFALFNEDM KPGPTSERNY GLYQPDMSMV YNVGLNQQAT 360 TSAASLSSLA TSPASRTDVR KDFAGLCLVT SLAILLITQS LLL* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 2.0e-7 | 111 | 346 | 240 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam00332 | Glyco_hydro_17 | 4.0e-97 | 35 | 353 | 319 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAD54223.1 | 0 | 1 | 358 | 1 | 361 | putative beta-1,3-glucanase precursor [Oryza sativa Japonica Group] |
GenBank | EEC80746.1 | 0 | 14 | 383 | 5 | 380 | hypothetical protein OsI_23229 [Oryza sativa Indica Group] |
RefSeq | NP_001057782.1 | 0 | 14 | 395 | 5 | 386 | Os06g0531000 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001130652.1 | 0 | 1 | 403 | 1 | 407 | hypothetical protein LOC100191753 [Zea mays] |
RefSeq | XP_002437077.1 | 0 | 6 | 382 | 9 | 387 | hypothetical protein SORBIDRAFT_10g020900 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ghs_B | 0 | 35 | 353 | 1 | 304 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 1ghs_A | 0 | 35 | 353 | 1 | 304 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 2cyg_A | 0 | 35 | 355 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3ur8_B | 0 | 35 | 356 | 3 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3ur8_A | 0 | 35 | 356 | 3 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |