y
Basic Information | |
---|---|
Species | Panicum virgatum |
Cazyme ID | Pavirv00009329m |
Family | GT8 |
Protein Properties | Length: 549 Molecular Weight: 62621.7 Isoelectric Point: 9.6462 |
Chromosome | Chromosome/Scaffold: 004582 Start: 5216 End: 11587 |
Description | galacturonosyltransferase 1 |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GT8 | 269 | 520 | 0 |
CLSMRLTIDYYLLSPEKRKFPNSENLENPDLYHYALFSDNVLAASVVVNSTIMNAKEPEKHVFHLVTDKLNFGAMNMWFLLNPPGDATIHVENVDDFKWL NSSYCPVLKQLESAAMKEYYFKADRPKTLSAGSSNLKYRNPKYLSMLNHLRFYLPQVYPKLNKILFLDDDIVVQRDLTGLWEVDLNGNVNGAVETCGESF HRFDKYLNFSNPNISQNFDPNACGWAYGMNMFDLEEWKRKDITGIYHKWQNM |
Full Sequence |
---|
Protein Sequence Length: 549 Download |
MPARALPFLV QSVPRSDPSR PAMAIRAGRR SALVALAFLL AASPCLQARV DQLYHGRQVS 60 DWSRQLNFEL QNLSSSQKDG RHLLASPQEI THRKLRARTG VRKKMEAVQQ DDEALVKLEN 120 TGIERSKAVD SAVLGKYSIW RRENENEKAD SRVRQMRDQM IMARIYSVLA KSRDKLDLYQ 180 ELLTRLKESQ RSLGEATADA ELPKSALERM KAMGQVLSKA RDLLYDCKAI TERLRVMLLS 240 ADEQVRSLKK QSTFLSQLAA KTIPNGIHCL SMRLTIDYYL LSPEKRKFPN SENLENPDLY 300 HYALFSDNVL AASVVVNSTI MNAKEPEKHV FHLVTDKLNF GAMNMWFLLN PPGDATIHVE 360 NVDDFKWLNS SYCPVLKQLE SAAMKEYYFK ADRPKTLSAG SSNLKYRNPK YLSMLNHLRF 420 YLPQVYPKLN KILFLDDDIV VQRDLTGLWE VDLNGNVNGA VETCGESFHR FDKYLNFSNP 480 NISQNFDPNA CGWAYGMNMF DLEEWKRKDI TGIYHKWQNM VKRKQAALEI GHTATRSSNF 540 LQADTPSG* 600 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02523 | PLN02523 | 1.0e-138 | 150 | 520 | 392 | + galacturonosyltransferase | ||
PLN02742 | PLN02742 | 3.0e-151 | 149 | 518 | 376 | + Probable galacturonosyltransferase | ||
PLN02718 | PLN02718 | 1.0e-154 | 150 | 531 | 389 | + Probable galacturonosyltransferase | ||
PLN02910 | PLN02910 | 0 | 69 | 520 | 452 | + polygalacturonate 4-alpha-galacturonosyltransferase | ||
PLN02829 | PLN02829 | 0 | 110 | 520 | 415 | + Probable galacturonosyltransferase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0016757 | transferase activity, transferring glycosyl groups |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACN33451.1 | 0 | 23 | 520 | 1 | 499 | unknown [Zea mays] |
GenBank | EEC81302.1 | 0 | 27 | 520 | 2 | 497 | hypothetical protein OsI_24438 [Oryza sativa Indica Group] |
GenBank | EEC84934.1 | 0 | 105 | 520 | 189 | 604 | hypothetical protein OsI_32147 [Oryza sativa Indica Group] |
RefSeq | NP_001130678.1 | 0 | 23 | 520 | 1 | 497 | hypothetical protein LOC100191781 [Zea mays] |
RefSeq | XP_002466644.1 | 0 | 23 | 520 | 1 | 497 | hypothetical protein SORBIDRAFT_01g011560 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ga8_A | 0.0003 | 408 | 522 | 75 | 181 | A Chain A, Crystal Structure Of A Methyltransferase-Like Protein (Spo2022) From Silicibacter Pomeroyi Dss-3 At 1.80 A Resolution |
PDB | 1g9r_A | 0.0003 | 408 | 522 | 75 | 181 | A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex With Mn And Udp-2f-Galactose |
PDB | 1ss9_A | 0.0004 | 408 | 522 | 75 | 181 | A Chain A, Crystal Structural Analysis Of Active Site Mutant Q189e Of Lgtc |
Metabolic Pathways | |||
---|---|---|---|
Pathway Name | Reaction | EC | Protein Name |
homogalacturonan biosynthesis | 2.4.1.43-RXN | EC-2.4.1.43 | polygalacturonate 4-α-galacturonosyltransferase |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
GO873566 | 287 | 234 | 520 | 0 |
GT040031 | 270 | 251 | 520 | 0 |
FL737101 | 261 | 242 | 502 | 0 |
GT040031 | 25 | 524 | 548 | 0.76 |
GO873566 | 25 | 524 | 548 | 3.8 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|