Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00009472m |
Family | CBM22 |
Protein Properties | Length: 581 Molecular Weight: 63392.4 Isoelectric Point: 6.3628 |
Chromosome | Chromosome/Scaffold: 005036 Start: 8097 End: 10928 |
Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM22 | 20 | 173 | 2.7e-21 |
CDSEDGLAGWAPSGSCTLSAHAEDPAADALPPPLAATADGDDDDEEEAVRLARKPSGRYVLAAHRRDEKDGLCRALSRAPRPKVTYRVAGWVGVGDGGAE GSHAVHVEVRVAGHRRVGGGVVVVEPGKWGDIKGSFRVDDDEPPRSAKVYVHGP | |||
GH10 | 233 | 513 | 0 |
VIQVQNSFPIGSCITKAGIQNPEYVDFFTKHFDWAVLENELKWYYTEAVQGQVSYADADELIGFCDRHGKPVRGHCIFWAVENAVQPWVRALNGDQLRAA VEARLRGLVSRYAGRFPHYEVNNEMLHGAFFQQRLGDDANAHMFRETAQIDPAPALFVNDYNVESANDPNATPEKYVALVTDLQRRGAPVGGIGIQGHVT HPVGDIICDALDKLAVTGLPIWVTELDVSAADEAVRADDLEIVLREAFAHPAVEGVMLWGFMQGHMWRSHGQLVNADGRLT |
Full Sequence |
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Protein Sequence Length: 581 Download |
MAFAEEETAH FGMNLVDGHC DSEDGLAGWA PSGSCTLSAH AEDPAADALP PPLAATADGD 60 DDDEEEAVRL ARKPSGRYVL AAHRRDEKDG LCRALSRAPR PKVTYRVAGW VGVGDGGAEG 120 SHAVHVEVRV AGHRRVGGGV VVVEPGKWGD IKGSFRVDDD EPPRSAKVYV HGPPAGVDLK 180 VMDLQVCAVN KIPRLRHLRK KADRVRKRDV ILKLSSRAAE DGVSGVAGAH IQVIQVQNSF 240 PIGSCITKAG IQNPEYVDFF TKHFDWAVLE NELKWYYTEA VQGQVSYADA DELIGFCDRH 300 GKPVRGHCIF WAVENAVQPW VRALNGDQLR AAVEARLRGL VSRYAGRFPH YEVNNEMLHG 360 AFFQQRLGDD ANAHMFRETA QIDPAPALFV NDYNVESAND PNATPEKYVA LVTDLQRRGA 420 PVGGIGIQGH VTHPVGDIIC DALDKLAVTG LPIWVTELDV SAADEAVRAD DLEIVLREAF 480 AHPAVEGVML WGFMQGHMWR SHGQLVNADG RLTEAGTRFA GLRREWTSHA RGKVDANGTF 540 RFRGFRGTYQ VFLTTAAGEV KKQTFDVKKG DAPLVLDMNF * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3693 | XynA | 4.0e-37 | 262 | 502 | 262 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
pfam00331 | Glyco_hydro_10 | 1.0e-73 | 238 | 520 | 303 | + Glycosyl hydrolase family 10. | ||
smart00633 | Glyco_10 | 3.0e-77 | 273 | 519 | 268 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACF84241.1 | 0 | 1 | 580 | 1 | 591 | unknown [Zea mays] |
GenBank | EAY72425.1 | 0 | 1 | 580 | 1 | 567 | hypothetical protein OsI_00279 [Oryza sativa Indica Group] |
GenBank | EEE53821.1 | 0 | 31 | 580 | 39 | 575 | hypothetical protein OsJ_00270 [Oryza sativa Japonica Group] |
RefSeq | NP_001147589.1 | 0 | 1 | 580 | 1 | 585 | endo-1,4-beta-xylanase [Zea mays] |
RefSeq | XP_002455242.1 | 0 | 10 | 580 | 18 | 594 | hypothetical protein SORBIDRAFT_03g006980 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1v0n_A | 2e-29 | 242 | 517 | 16 | 294 | A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant Xyloglucanase Isoform Nxg1-Delta-Yniig |
PDB | 1v0m_A | 2e-29 | 242 | 517 | 16 | 294 | A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant Xyloglucanase Isoform Nxg1-Delta-Yniig |
PDB | 1v0l_A | 2e-29 | 242 | 517 | 16 | 294 | A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant Xyloglucanase Isoform Nxg1-Delta-Yniig |
PDB | 1v0k_A | 2e-29 | 242 | 517 | 16 | 294 | A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant Xyloglucanase Isoform Nxg1-Delta-Yniig |
PDB | 1od8_A | 2e-29 | 242 | 517 | 16 | 294 | A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant Xyloglucanase Isoform Nxg1-Delta-Yniig |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FL874412 | 262 | 223 | 484 | 0 |
FL875205 | 243 | 295 | 537 | 0 |
EG387260 | 244 | 217 | 455 | 0 |
GO850973 | 329 | 160 | 488 | 0 |
FL870562 | 190 | 392 | 581 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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