| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00009477m |
| Family | CBM53 |
| Protein Properties | Length: 1121 Molecular Weight: 126943 Isoelectric Point: 5.024 |
| Chromosome | Chromosome/Scaffold: 005158 Start: 9360 End: 16888 |
| Description | starch synthase 3 |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM53 | 238 | 321 | 1e-31 |
| SMINLYLNRSMSALASEPDVLIKGAFNGWRWNSFTENLHKSELRGDWWCCKLYIPKQAYRLDFVFFNGDTVYENNNHNDFFLEI | |||
| CBM53 | 574 | 662 | 5.5e-35 |
| GTTVDVFYNPSNTVLNGKLEVWFRGSFNRWIHPSGPLPPQKMVKAENGSHLRATVRVPLDAYMMDFVFSESEDGGIYDNRNGMDYHIPV | |||
| CBM53 | 412 | 502 | 8.8e-36 |
| GDRVRLYYNRSSRPLMHNIEIWMHGGFNNWNDGLSISERFVKSHEKDGDWWYAEVTLPERALVLDWVFADGPPGNARNYDNNGRQDFHAVV | |||
| GT5 | 673 | 1115 | 0 |
| HIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLGHNVEVILPKYDCLNLSNVKDLHYQQSFAWGGTEIKVWFGKVEDLPVYFLEPQNGMFWVGCVYGKNDE SRFGFFCHSALEFLLQKGSSPDIIHCHDWSSAPVAWLYKEQYALNGLGNGRVVFTIHNLEFGAHHIGKAMAHCDKATTVSDTYSKEVAGHGAIAPHYFKF HGIRNGIDPDIWDPYTDNFIPVHYTSENVVEGKSAAKKALQQMLGLQQTDTPIVGIISRLTVQKGIHLIKHAIYRTLERNGQVVLLGSAPDPRIQGDFTN LASRLHGEYHGRVKLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLIAMRYGSIPIVRKTGGLYDTVFDVDDDKDRAQAQGLEPNGFSFEGADTSGVD YALDRAISTFYDARDWFNSLCKRVMEQDWSWNRPALDYMELYH | |||
| Full Sequence |
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| Protein Sequence Length: 1121 Download |
| PKGTASRGYA SRPTAESSTK KIEQSSTVEG DLGKSNGTLH GEATGQASSA EESSEIDLPG 60 TVASKAEKDE AGTKEEAGQN QSSASSSMPM DDESIDRKLD EYRGKISALV SSKPEPSTSA 120 SVRGQDKPPI GTDEQEKSIT GFEEHDSSIV NEPRKGRPFA EAIVGYPVKH AEEEPPVSED 180 DELRIIKDQE QYEPDIQAPV EDDVDPEVLK RRLQELADES YSVGNKCFVF PEVVKADSMI 240 NLYLNRSMSA LASEPDVLIK GAFNGWRWNS FTENLHKSEL RGDWWCCKLY IPKQAYRLDF 300 VFFNGDTVYE NNNHNDFFLE IESDMDEHSF EDFLVEEKQK ELERLAAEEA ERKRQAEEER 360 RREEERAAME ADRAQAKYEV EMKKEKLHQM LSSASGYADN LWYIEPNTYK GGDRVRLYYN 420 RSSRPLMHNI EIWMHGGFNN WNDGLSISER FVKSHEKDGD WWYAEVTLPE RALVLDWVFA 480 DGPPGNARNY DNNGRQDFHA VVPNNIPEDM FWVEEEHRIF RRLQQERRER EDADRLKAER 540 SAKMKAEMKE KTMRAFLISQ KHIVYTEPLE VRAGTTVDVF YNPSNTVLNG KLEVWFRGSF 600 NRWIHPSGPL PPQKMVKAEN GSHLRATVRV PLDAYMMDFV FSESEDGGIY DNRNGMDYHI 660 PVSDSVAKEP PMHIVHIAVE MAPIAKVGGL GDVVTSLSRA VQDLGHNVEV ILPKYDCLNL 720 SNVKDLHYQQ SFAWGGTEIK VWFGKVEDLP VYFLEPQNGM FWVGCVYGKN DESRFGFFCH 780 SALEFLLQKG SSPDIIHCHD WSSAPVAWLY KEQYALNGLG NGRVVFTIHN LEFGAHHIGK 840 AMAHCDKATT VSDTYSKEVA GHGAIAPHYF KFHGIRNGID PDIWDPYTDN FIPVHYTSEN 900 VVEGKSAAKK ALQQMLGLQQ TDTPIVGIIS RLTVQKGIHL IKHAIYRTLE RNGQVVLLGS 960 APDPRIQGDF TNLASRLHGE YHGRVKLCLT YDEPLSHLIY AGADFILVPS IFEPCGLTQL 1020 IAMRYGSIPI VRKTGGLYDT VFDVDDDKDR AQAQGLEPNG FSFEGADTSG VDYALDRAIS 1080 TFYDARDWFN SLCKRVMEQD WSWNRPALDY MELYHSARKN * 1140 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02939 | PLN02939 | 5.0e-142 | 672 | 1117 | 493 | + transferase, transferring glycosyl groups | ||
| TIGR02095 | glgA | 7.0e-147 | 672 | 1117 | 489 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| PRK00654 | glgA | 8.0e-159 | 672 | 1120 | 487 | + glycogen synthase; Provisional | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 1.0e-166 | 673 | 1116 | 490 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| PLN02316 | PLN02316 | 0 | 1 | 1119 | 1120 | + synthase/transferase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACC86847.1 | 0 | 2 | 1120 | 69 | 1191 | starch synthase IIIb precursor [Sorghum bicolor] |
| GenBank | ACY56216.1 | 0 | 1 | 1120 | 65 | 1216 | soluble starch synthase III-1 [Oryza sativa Japonica Group] |
| RefSeq | NP_001106015.1 | 0 | 2 | 1120 | 69 | 1191 | starch synthase IIIb-1 precursor [Zea mays] |
| RefSeq | NP_001106016.1 | 0 | 2 | 1120 | 69 | 1188 | starch synthase IIIb-2 precursor [Zea mays] |
| RefSeq | XP_002448557.1 | 0 | 2 | 1120 | 69 | 1173 | hypothetical protein SORBIDRAFT_06g029050 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3d1j_A | 0 | 672 | 1115 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 3guh_A | 0 | 672 | 1115 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4u_A | 0 | 672 | 1115 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4t_A | 0 | 672 | 1115 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2qzs_A | 0 | 672 | 1115 | 1 | 474 | A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO794758 | 565 | 556 | 1119 | 0 |
| HO778003 | 740 | 167 | 905 | 0 |
| GT033751 | 342 | 723 | 1064 | 0 |
| GO840562 | 322 | 556 | 877 | 0 |
| HO794758 | 106 | 403 | 506 | 1.3 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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