| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00009513m |
| Family | GT5 |
| Protein Properties | Length: 609 Molecular Weight: 66806.7 Isoelectric Point: 6.57 |
| Chromosome | Chromosome/Scaffold: 004882 Start: 9177 End: 15113 |
| Description | UDP-Glycosyltransferase superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT5 | 83 | 580 | 0 |
| IIFVATEVHPWCKTGGLGDVVGGLPPALAAMGHRVMTIAPRYDQYKDAWDTNVLVEVNVGDTVETVRFFHCYKRGVDRIFVDHPMFLEKVWGKTGAKLYG PTTGSDYRDNQLRFCLLCLAALEAPRVLNLSNSEYFSGPYGEDVVFVANDWHTAVLPCYLKSMYKPNGIYANAKVAFCIHNIAYQGRFARADFEVLNLPD SFLPSFDFIDGHVKPVLGRKINWMKAGIVESDLVLTVSPHYVKELTSGPDKGVELDGVLRTKPLETGIVNGMDVYEWDPSTDKYISVKYDATTVTEARAL NKERLQAEVGLPVDSNIPVIVFVGRLEEQKGSDILISAIPEFVGENVQIIVLGTGKKKMEEELTLLEVKYPNNARGIAKFNVPLAHMMFAGADFIIVPSR FEPCGLIQLQGMRYGVIPICSSTGGLVDTVKEGVTGFHMGPFNVECETVDTADVAAVASTVTRALEQYATPVFHEMIQNCMVQDLSWKGPAKKWEEVL | |||
| Full Sequence |
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| Protein Sequence Length: 609 Download |
| MAAAMGSISA YGSYQTNRPS ALKQTPHMQF QQCCRGGVRF VSNHSQSVRS KTRLSKRRAT 60 NNGIRPKTTR SQAPIVCSTG MTIIFVATEV HPWCKTGGLG DVVGGLPPAL AAMGHRVMTI 120 APRYDQYKDA WDTNVLVEVN VGDTVETVRF FHCYKRGVDR IFVDHPMFLE KVWGKTGAKL 180 YGPTTGSDYR DNQLRFCLLC LAALEAPRVL NLSNSEYFSG PYGEDVVFVA NDWHTAVLPC 240 YLKSMYKPNG IYANAKVAFC IHNIAYQGRF ARADFEVLNL PDSFLPSFDF IDGHVKPVLG 300 RKINWMKAGI VESDLVLTVS PHYVKELTSG PDKGVELDGV LRTKPLETGI VNGMDVYEWD 360 PSTDKYISVK YDATTVTEAR ALNKERLQAE VGLPVDSNIP VIVFVGRLEE QKGSDILISA 420 IPEFVGENVQ IIVLGTGKKK MEEELTLLEV KYPNNARGIA KFNVPLAHMM FAGADFIIVP 480 SRFEPCGLIQ LQGMRYGVIP ICSSTGGLVD TVKEGVTGFH MGPFNVECET VDTADVAAVA 540 STVTRALEQY ATPVFHEMIQ NCMVQDLSWK GPAKKWEEVL LGLGVEGSEA GIEGEEIAPL 600 AKENVATP* 660 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK14099 | PRK14099 | 8.0e-76 | 79 | 578 | 519 | + glycogen synthase; Provisional | ||
| COG0297 | GlgA | 6.0e-99 | 81 | 578 | 515 | + Glycogen synthase [Carbohydrate transport and metabolism] | ||
| PRK00654 | glgA | 2.0e-127 | 81 | 579 | 510 | + glycogen synthase; Provisional | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 3.0e-159 | 83 | 580 | 511 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| TIGR02095 | glgA | 2.0e-170 | 81 | 583 | 516 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACG43100.1 | 0 | 1 | 608 | 1 | 609 | granule-bound starch synthase 1b [Zea mays] |
| GenBank | ACL54413.1 | 0 | 1 | 608 | 1 | 609 | unknown [Zea mays] |
| GenBank | ACY56072.1 | 0 | 1 | 608 | 1 | 608 | granule-bound starch synthase II [Oryza sativa Japonica Group] |
| RefSeq | NP_001106039.1 | 0 | 1 | 608 | 1 | 609 | granule bound starch synthase IIa precursor [Zea mays] |
| RefSeq | XP_002461889.1 | 0 | 1 | 608 | 1 | 607 | hypothetical protein SORBIDRAFT_02g009870 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3vuf_A | 0 | 81 | 608 | 10 | 536 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 3vue_A | 0 | 81 | 608 | 10 | 536 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
| PDB | 3guh_A | 0 | 81 | 586 | 1 | 479 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
| PDB | 2r4u_A | 0 | 81 | 586 | 1 | 479 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
| PDB | 2r4t_A | 0 | 81 | 586 | 1 | 479 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| AJ568414 | 580 | 37 | 609 | 0 |
| HO825853 | 519 | 89 | 607 | 0 |
| HO629148 | 581 | 36 | 609 | 0 |
| CX101131 | 346 | 238 | 583 | 0 |
| HO778340 | 375 | 59 | 432 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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