Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00009799m |
Family | CBM43 |
Protein Properties | Length: 488 Molecular Weight: 53256.3 Isoelectric Point: 8.3207 |
Chromosome | Chromosome/Scaffold: 003980 Start: 8974 End: 12353 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 373 | 454 | 3.8e-23 |
WCVFNKDAKDKYKDLPASVNYACSNADCTPLGYGSSCNGLSHDGNISYAFNIYFQTMDQDVRACSFGGLAKITTTNASQGGC | |||
GH17 | 31 | 350 | 0 |
VGVNWGTMMSHPILPSAVVEMLRANGVDRVKLFDADPWTVAALAGSGVQAMLAAPNDQLESLARDPRRARDWVRHNVTANLKAGVDVRYVAVGNEPFLKS YNGSFINITFPALKNMQKALNEAGFGQRIKVVVPLNADIYSSPENTPVPSAGSFRKDINDLMVDIVNFLHVNDAPFVVNIYPFLSLYQNPNFPLNFSFFD GATKPVYDQGMVYTNVFDANFDTLVWSLRKAGVPDMRIIVGEVGWPTDGDKNANVKYAQRFYSGFLKKMAKNVGTPLRPGHMEVYLFALIDENQKSVLPG RFERHWGLFTYDGNPKFSMD |
Full Sequence |
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Protein Sequence Length: 488 Download |
MAPRPAAVAL AVALLLLLLL LPAPAAAAAA VGVNWGTMMS HPILPSAVVE MLRANGVDRV 60 KLFDADPWTV AALAGSGVQA MLAAPNDQLE SLARDPRRAR DWVRHNVTAN LKAGVDVRYV 120 AVGNEPFLKS YNGSFINITF PALKNMQKAL NEAGFGQRIK VVVPLNADIY SSPENTPVPS 180 AGSFRKDIND LMVDIVNFLH VNDAPFVVNI YPFLSLYQNP NFPLNFSFFD GATKPVYDQG 240 MVYTNVFDAN FDTLVWSLRK AGVPDMRIIV GEVGWPTDGD KNANVKYAQR FYSGFLKKMA 300 KNVGTPLRPG HMEVYLFALI DENQKSVLPG RFERHWGLFT YDGNPKFSMD LSGNGKVNYL 360 AEVKGVQYLP SQWCVFNKDA KDKYKDLPAS VNYACSNADC TPLGYGSSCN GLSHDGNISY 420 AFNIYFQTMD QDVRACSFGG LAKITTTNAS QGGCLFPVQI LSVSGRVVPL IFLHLSLVLL 480 VSVFTLL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 1.0e-15 | 372 | 442 | 81 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 1.0e-29 | 372 | 456 | 87 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 1.0e-74 | 32 | 350 | 321 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EEC79587.1 | 0 | 29 | 432 | 31 | 432 | hypothetical protein OsI_20766 [Oryza sativa Indica Group] |
GenBank | EEE64491.1 | 0 | 29 | 487 | 31 | 487 | hypothetical protein OsJ_19341 [Oryza sativa Japonica Group] |
RefSeq | NP_001056153.1 | 0 | 29 | 487 | 31 | 487 | Os05g0535100 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001152213.1 | 0 | 34 | 462 | 33 | 460 | glucan endo-1,3-beta-glucosidase 5 [Zea mays] |
RefSeq | XP_002440138.1 | 0 | 34 | 464 | 34 | 463 | hypothetical protein SORBIDRAFT_09g026690 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3ur8_B | 0 | 31 | 354 | 3 | 317 | X Chain X, Ascorbate Peroxidase R172a Mutant |
PDB | 3ur8_A | 0 | 31 | 354 | 3 | 317 | X Chain X, Ascorbate Peroxidase R172a Mutant |
PDB | 3ur7_B | 0 | 31 | 354 | 3 | 317 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 3ur7_A | 0 | 31 | 354 | 3 | 317 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 4gzj_A | 0 | 31 | 354 | 3 | 317 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |