Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00010253m |
Family | CBM43 |
Protein Properties | Length: 437 Molecular Weight: 47001.4 Isoelectric Point: 6.8864 |
Chromosome | Chromosome/Scaffold: 003904 Start: 2042 End: 4207 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 324 | 403 | 2.7e-25 |
WCVIDNNKDLSNVSASFSAACSHGDCTALSPGGSCSGLGWPGNVSYAFNNYYQQHDQSEDSCDFNGLGLITTVDPSVNDC | |||
GH17 | 2 | 302 | 0 |
VQGLLLPNSVPRVRLAAASSDALSALAGTGVAVTVGVPDALLRPLASSTKAAAAWVHDNITRYASSVRFEYIAVGDEPFLLSHGQHFQPFVVPAAANIKK ALTAAKLSTKIKVVVPCSADTYQNASMLPSKASFRPDVNKTMGELLSFLSNNSSPFMVELDPFLSFQRHKNLSLDYYLFQLMSHPVKDGQNKYDNYFDAS IDAVVTALTNAGFSDMDIIVGRAGWPTDGAVNATPAIAQSFMIGLVNHLAKKSGTPLRPKVPPVETYLFSLLDEDQRNTTNGGYERHHGIFTFDGQAKYY A |
Full Sequence |
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Protein Sequence Length: 437 Download |
VVQGLLLPNS VPRVRLAAAS SDALSALAGT GVAVTVGVPD ALLRPLASST KAAAAWVHDN 60 ITRYASSVRF EYIAVGDEPF LLSHGQHFQP FVVPAAANIK KALTAAKLST KIKVVVPCSA 120 DTYQNASMLP SKASFRPDVN KTMGELLSFL SNNSSPFMVE LDPFLSFQRH KNLSLDYYLF 180 QLMSHPVKDG QNKYDNYFDA SIDAVVTALT NAGFSDMDII VGRAGWPTDG AVNATPAIAQ 240 SFMIGLVNHL AKKSGTPLRP KVPPVETYLF SLLDEDQRNT TNGGYERHHG IFTFDGQAKY 300 YANIGQGPKS LKNALDVGYF PSKWCVIDNN KDLSNVSASF SAACSHGDCT ALSPGGSCSG 360 LGWPGNVSYA FNNYYQQHDQ SEDSCDFNGL GLITTVDPSV NDCLFPLAIR TSAAASLHLT 420 LAMFRLLVFW VCIFCL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 0.004 | 218 | 295 | 82 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 7.0e-17 | 323 | 391 | 76 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 3.0e-30 | 323 | 405 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 2.0e-43 | 39 | 300 | 263 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABF95444.1 | 0 | 1 | 436 | 52 | 487 | Glycosyl hydrolases family 17 protein, expressed [Oryza sativa (japonica cultivar-group)] |
GenBank | ACF78459.1 | 0 | 1 | 436 | 49 | 484 | unknown [Zea mays] |
GenBank | EEC75046.1 | 0 | 1 | 436 | 52 | 487 | hypothetical protein OsI_11151 [Oryza sativa Indica Group] |
RefSeq | NP_001130286.1 | 0 | 1 | 436 | 49 | 484 | hypothetical protein LOC100191380 [Zea mays] |
RefSeq | XP_002468022.1 | 0 | 1 | 418 | 49 | 466 | hypothetical protein SORBIDRAFT_01g038220 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3f55_D | 0 | 2 | 303 | 19 | 314 | A Chain A, Rice Bglu1 Beta-Glucosidase, A Plant ExoglucanaseBETA-Glucosidase |
PDB | 3f55_C | 0 | 2 | 303 | 19 | 314 | A Chain A, Rice Bglu1 Beta-Glucosidase, A Plant ExoglucanaseBETA-Glucosidase |
PDB | 3f55_B | 0 | 2 | 303 | 19 | 314 | A Chain A, Rice Bglu1 Beta-Glucosidase, A Plant ExoglucanaseBETA-Glucosidase |
PDB | 3f55_A | 0 | 2 | 303 | 19 | 314 | A Chain A, Rice Bglu1 Beta-Glucosidase, A Plant ExoglucanaseBETA-Glucosidase |
PDB | 3em5_D | 0 | 2 | 303 | 19 | 314 | A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DV525554 | 237 | 174 | 410 | 0 |
DV173025 | 229 | 209 | 437 | 0 |
CJ534115 | 219 | 187 | 405 | 0 |
CJ534731 | 237 | 200 | 436 | 0 |
CI145066 | 217 | 220 | 436 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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