| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00010263m |
| Family | GH35 |
| Protein Properties | Length: 835 Molecular Weight: 93343.7 Isoelectric Point: 8.6883 |
| Chromosome | Chromosome/Scaffold: 005619 Start: 3166 End: 7863 |
| Description | glycosyl hydrolase family 35 protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH35 | 25 | 329 | 0 |
| LMVDGHREIFFSGSIHYPRSPPDMWPDLIAKAKEGGLNVIESYVFWNIHEPEKGVLNFEGRYDMVKFFKMIQDNDMYAVVRIGPFIQAEWNHGGLPYWLR EVPDIIFRTNNEPFKSHMEKFVNLIVKKLKDANLFASQGGPIILAQIENEYQHLEAAFKEEGTKYINWAAKMAEATDTGVPWIMCKQTKAPGEVIPTCNG RNCGDTWPGPMNKTKPLLWTENWTAQYRVFGDPPSQRSAEDIAFAVARFFSVGGTMTNYYMYHGGTNFGRTAAAFVMPKYYDEAPLDEFGLYKEPKWGHL RDLHQ | |||
| Full Sequence |
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| Protein Sequence Length: 835 Download |
| MASGAAAAWE LTKKGTVVSY DRRSLMVDGH REIFFSGSIH YPRSPPDMWP DLIAKAKEGG 60 LNVIESYVFW NIHEPEKGVL NFEGRYDMVK FFKMIQDNDM YAVVRIGPFI QAEWNHGGLP 120 YWLREVPDII FRTNNEPFKS HMEKFVNLIV KKLKDANLFA SQGGPIILAQ IENEYQHLEA 180 AFKEEGTKYI NWAAKMAEAT DTGVPWIMCK QTKAPGEVIP TCNGRNCGDT WPGPMNKTKP 240 LLWTENWTAQ YRVFGDPPSQ RSAEDIAFAV ARFFSVGGTM TNYYMYHGGT NFGRTAAAFV 300 MPKYYDEAPL DEFGLYKEPK WGHLRDLHQA LRLCKKALLW GTMSTQPLGK QFEARVFEIK 360 DQNVCVAFLS NHNTKDDVTL TFRGQPYFVP RHSISILADC KTVVFSTQHV NSQHNQRTFH 420 FADQTVQNNV WQMFDEEKIP KFKQAKIRTR KAEELYNLTK DKTDYVWYTS SFKLEADDMP 480 FRRDIRPVLE VNSHGHASVA FVNNVFVGCG HGTKMNKAFM LQKPMDLKKG VNHIAVLAST 540 LGMMDSGAYL EHREAGIDRV QITGLNAGTL DLTNNGWGHI VGLIGEQKEI YSEKGMGSVA 600 WKPAARDKPL TWYKRNFDMP SGDDPVVLDL SPMGKGMMFV NGEGIGRYWI SYKHALGRPS 660 QQLYHVPRSF LREKNNVLVI FEEEGGNPEA IMILTVKRDT ICTFISEKNP AHIKSWQRED 720 SQITAKGGAG GDLKPQATLT CPPKKVIQQV VFASYGNPQG ICGNYTVGSC HTPRAHDVAA 780 KACVGQRTCT LPVSADAYGG DLKCPGTTAT LAVQAKCSKR PPPGAPGGPA AAAQ* 840 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02449 | Glyco_hydro_42 | 5.0e-5 | 45 | 175 | 149 | + Beta-galactosidase. This group of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. The enzyme catalyzes the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues. | ||
| pfam02140 | Gal_Lectin | 7.0e-20 | 739 | 817 | 83 | + Galactose binding lectin domain. | ||
| COG1874 | LacA | 5.0e-20 | 18 | 175 | 169 | + Beta-galactosidase [Carbohydrate transport and metabolism] | ||
| pfam01301 | Glyco_hydro_35 | 9.0e-139 | 24 | 331 | 322 | + Glycosyl hydrolases family 35. | ||
| PLN03059 | PLN03059 | 0 | 18 | 818 | 827 | + beta-galactosidase; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005529 | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates." [CHEBI:16646, GOC:mah] |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACL54349.1 | 0 | 9 | 825 | 34 | 849 | unknown [Zea mays] |
| GenBank | EEE69115.1 | 0 | 10 | 825 | 25 | 844 | hypothetical protein OsJ_28192 [Oryza sativa Japonica Group] |
| GenBank | EEE70132.1 | 0 | 9 | 817 | 27 | 830 | hypothetical protein OsJ_30164 [Oryza sativa Japonica Group] |
| RefSeq | NP_001062440.1 | 0 | 10 | 825 | 25 | 844 | Os08g0549200 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002445734.1 | 0 | 12 | 825 | 32 | 842 | hypothetical protein SORBIDRAFT_07g024870 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3d3a_A | 2e-39 | 22 | 327 | 12 | 325 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 3d3a_A | 0.009 | 605 | 685 | 504 | 575 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 3thd_D | 1e-36 | 12 | 329 | 5 | 332 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 3thd_C | 1e-36 | 12 | 329 | 5 | 332 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| lactose degradation III | BETAGALACTOSID-RXN | EC-3.2.1.23 | β-galactosidase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO778160 | 713 | 18 | 703 | 0 |
| FL805036 | 258 | 324 | 581 | 0 |
| FL816792 | 255 | 420 | 674 | 0 |
| DV168211 | 278 | 379 | 656 | 0 |
| FL814423 | 238 | 275 | 512 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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