| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00010284m |
| Family | GH2 |
| Protein Properties | Length: 836 Molecular Weight: 93289.7 Isoelectric Point: 6.3859 |
| Chromosome | Chromosome/Scaffold: 004001 Start: 9793 End: 14633 |
| Description | glycoside hydrolase family 2 protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH2 | 19 | 701 | 0 |
| LSIEAALYDNSVLSDSLDAVLSSANVANLKPKPKATRNPCLGFHGYVLGGKIENPKLWSSEHPNLYTLVVLLKDAKGKLIECESCQVGIRNVVLAHKQML VNGCPVVLRGVNRHEHHPCLGKTNIEACMIKDLILMRQNNINAVRNSHYPQHSRWYELCDIFGLYVIDEANIETHGFDENSHFKHPTLEPIWANAMLDRV VGMVERDKNHACIIVWSLGNESSYGPNHASMSGWIRERDPTRLLHYEGGGSRTSSTDIVCPMYMRVWDIIKIAKDPSETRPLILCEYSHAMGNSNGNIDA YWMAIDSTFGLQGGFIWDWVDQGLLKDDSDGSKFWAYGGDFGDTPNDSNFCLNGIVWPDRSIHPAVHEVKYLYQPIKISSADNMLKIENGHFFETTDALD FSWVLQGDGCILGSGSLNVPTLAPQTSHLINMESSPWFSLWSTYAAKEVFLSVNAKQRYQTRWAKDGHLLASAQLCLPQKNGFVPHAIAFSSSPLACERT GDSVIISKNNAWKIKVNSQLGTIDSWKVNGVELMSKGIFPCFWRAPTDNDKGGFYTKPYVSQWREASLDNVSFYSSQFSVKELPDNTVELSTVYYGLPGN LPKPDDAALSQAPGSTLFQVTMLCRIYESGDVVLEYKVNPKADLPPLPRVGVVFNVEKTLSHVTWYGRGPFECYPDRKVAAHV | |||
| Full Sequence |
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| Protein Sequence Length: 836 Download |
| QVEVEIDSHK QDREHVSTLS IEAALYDNSV LSDSLDAVLS SANVANLKPK PKATRNPCLG 60 FHGYVLGGKI ENPKLWSSEH PNLYTLVVLL KDAKGKLIEC ESCQVGIRNV VLAHKQMLVN 120 GCPVVLRGVN RHEHHPCLGK TNIEACMIKD LILMRQNNIN AVRNSHYPQH SRWYELCDIF 180 GLYVIDEANI ETHGFDENSH FKHPTLEPIW ANAMLDRVVG MVERDKNHAC IIVWSLGNES 240 SYGPNHASMS GWIRERDPTR LLHYEGGGSR TSSTDIVCPM YMRVWDIIKI AKDPSETRPL 300 ILCEYSHAMG NSNGNIDAYW MAIDSTFGLQ GGFIWDWVDQ GLLKDDSDGS KFWAYGGDFG 360 DTPNDSNFCL NGIVWPDRSI HPAVHEVKYL YQPIKISSAD NMLKIENGHF FETTDALDFS 420 WVLQGDGCIL GSGSLNVPTL APQTSHLINM ESSPWFSLWS TYAAKEVFLS VNAKQRYQTR 480 WAKDGHLLAS AQLCLPQKNG FVPHAIAFSS SPLACERTGD SVIISKNNAW KIKVNSQLGT 540 IDSWKVNGVE LMSKGIFPCF WRAPTDNDKG GFYTKPYVSQ WREASLDNVS FYSSQFSVKE 600 LPDNTVELST VYYGLPGNLP KPDDAALSQA PGSTLFQVTM LCRIYESGDV VLEYKVNPKA 660 DLPPLPRVGV VFNVEKTLSH VTWYGRGPFE CYPDRKVAAH VGVHESSVDD LHVPYIAPVE 720 CGGRADVRWM ALRNADGLGL YASVHGESPP MQMSTSYYGT TELDRATHVH KLVKGDDIEV 780 HLDHKHMGLG GDDSWSPCVH EQYLVPPTRY AFSMRLCPLL PSSSCHDIYK SQLPR* 840 |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| smart01038 | Bgal_small_N | 1.0e-87 | 526 | 816 | 292 | + Beta galactosidase small chain. This domain comprises the small chain of dimeric beta-galactosidases EC:3.2.1.23. This domain is also found in single chain beta-galactosidase. | ||
| COG3250 | LacZ | 5.0e-107 | 69 | 699 | 636 | + Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism] | ||
| pfam02836 | Glyco_hydro_2_C | 1.0e-112 | 110 | 396 | 297 | + Glycosyl hydrolases family 2, TIM barrel domain. This family contains beta-galactosidase, beta-mannosidase and beta-glucuronidase activities. | ||
| PRK09525 | lacZ | 0 | 70 | 818 | 768 | + beta-D-galactosidase; Reviewed | ||
| PRK10340 | ebgA | 0 | 69 | 819 | 763 | + cryptic beta-D-galactosidase subunit alpha; Reviewed | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0004565 | beta-galactosidase activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0009341 | beta-galactosidase complex |
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC72176.1 | 0 | 1 | 834 | 235 | 1031 | hypothetical protein OsI_05227 [Oryza sativa Indica Group] |
| RefSeq | NP_001045421.1 | 0 | 1 | 834 | 283 | 1116 | Os01g0952600 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002266400.1 | 0 | 1 | 833 | 282 | 1112 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
| RefSeq | XP_002266434.1 | 0 | 1 | 833 | 282 | 1113 | PREDICTED: hypothetical protein isoform 2 [Vitis vinifera] |
| RefSeq | XP_002513059.1 | 0 | 1 | 832 | 282 | 1107 | beta-galactosidase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3muy_4 | 0 | 70 | 817 | 295 | 1021 | 1 Chain 1, E. Coli (Lacz) Beta-Galactosidase (R599a) |
| PDB | 3muy_3 | 0 | 70 | 817 | 295 | 1021 | 1 Chain 1, E. Coli (Lacz) Beta-Galactosidase (R599a) |
| PDB | 3muy_2 | 0 | 70 | 817 | 295 | 1021 | 1 Chain 1, E. Coli (Lacz) Beta-Galactosidase (R599a) |
| PDB | 3muy_1 | 0 | 70 | 817 | 295 | 1021 | 1 Chain 1, E. Coli (Lacz) Beta-Galactosidase (R599a) |
| PDB | 1f4h_D | 0 | 70 | 817 | 293 | 1019 | 1 Chain 1, E. Coli (Lacz) Beta-Galactosidase (R599a) |
| Metabolic Pathways | |||
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| Pathway Name | Reaction | EC | Protein Name |
| lactose degradation III | BETAGALACTOSID-RXN | EC-3.2.1.23 | β-galactosidase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| FL727074 | 272 | 188 | 459 | 0 |
| FL765186 | 262 | 462 | 723 | 0 |
| FL769129 | 261 | 188 | 448 | 0 |
| FL823757 | 261 | 181 | 441 | 0 |
| FL705689 | 260 | 255 | 514 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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