| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00010344m |
| Family | CE8 |
| Protein Properties | Length: 258 Molecular Weight: 27852.1 Isoelectric Point: 4.9241 |
| Chromosome | Chromosome/Scaffold: 004343 Start: 7060 End: 9243 |
| Description | pectin methylesterase 44 |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 2 | 242 | 0 |
| EATVISGNRCCADGFDTRGTALLSVQGKGFIARDLCIENTAGPRKELGQAVALLSESDQSVLYRCALRGYQDTLCASNLNQFYRECTITGTVDFIFGNAT AVFQDCSILARRPIQGQENTITAQGRDGATSNGGFCFQACTVAGDEDFAAHGKGTVQTYLGRPWKPYSRVIFMQTTISDVLDPKGWLPWEGEVPHDTLYY AEYKNEGPGAATGGRVNWRGVHATIDASEASSFTVEKFING | |||
| Full Sequence |
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| Protein Sequence Length: 258 Download |
| MEATVISGNR CCADGFDTRG TALLSVQGKG FIARDLCIEN TAGPRKELGQ AVALLSESDQ 60 SVLYRCALRG YQDTLCASNL NQFYRECTIT GTVDFIFGNA TAVFQDCSIL ARRPIQGQEN 120 TITAQGRDGA TSNGGFCFQA CTVAGDEDFA AHGKGTVQTY LGRPWKPYSR VIFMQTTISD 180 VLDPKGWLPW EGEVPHDTLY YAEYKNEGPG AATGGRVNWR GVHATIDASE ASSFTVEKFI 240 NGNAWLPSTG VEYRPGL* |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| PLN02314 | PLN02314 | 2.0e-100 | 1 | 253 | 254 | + pectinesterase |
| PLN02301 | PLN02301 | 1.0e-101 | 1 | 257 | 257 | + pectinesterase/pectinesterase inhibitor |
| PLN02468 | PLN02468 | 4.0e-102 | 1 | 257 | 257 | + putative pectinesterase/pectinesterase inhibitor |
| PLN02201 | PLN02201 | 2.0e-111 | 1 | 257 | 257 | + probable pectinesterase/pectinesterase inhibitor |
| pfam01095 | Pectinesterase | 2.0e-125 | 1 | 243 | 243 | + Pectinesterase. |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI29628.1 | 0 | 1 | 257 | 272 | 525 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_001061940.1 | 0 | 1 | 257 | 292 | 555 | Os08g0450100 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001147569.1 | 0 | 1 | 257 | 291 | 557 | pectinesterase PPE8B [Zea mays] |
| RefSeq | XP_002270616.1 | 0 | 1 | 257 | 276 | 529 | PREDICTED: pectin methylesterase PME1 [Vitis vinifera] |
| RefSeq | XP_002462596.1 | 0 | 1 | 257 | 65 | 319 | hypothetical protein SORBIDRAFT_02g028740 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1xg2_A | 0 | 1 | 257 | 62 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1gq8_A | 0 | 3 | 257 | 68 | 319 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1qjv_B | 0.000000000000002 | 18 | 212 | 85 | 312 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1qjv_A | 0.000000000000002 | 18 | 212 | 85 | 312 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 2ntq_B | 0.000000000000008 | 18 | 211 | 85 | 311 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| FL829329 | 190 | 70 | 258 | 0 |
| FG161538 | 244 | 14 | 257 | 0 |
| DT730044 | 257 | 1 | 257 | 0 |
| EH695820 | 257 | 1 | 257 | 0 |
| CO361900 | 253 | 1 | 253 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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