CAZyme Information

Basic Information
SpeciesPanicum virgatum
Cazyme IDPavirv00010357m
FamilyGT2
Protein PropertiesLength: 222 Molecular Weight: 24935.8 Isoelectric Point: 9.856
ChromosomeChromosome/Scaffold: 004908 Start: 7028 End: 10123
DescriptionNucleotide-diphospho-sugar transferases superfamily protein
View CDS
External Links
CAZyDB
Signature Domain  Download full data set without filtering
FamilyStartEndEvalue
GT2121800
  SIIVPTYNERLNVALIVYLIFKHLPDVNFEIIIVDDGSPDGTQDIVKQLQQVYGEDRVLLRARPRKLGLGTAYLHGLKHASGEFVIIMDADLSHHPKYLP
  SFIRKQKETGADVVTGTRYVKNGGVHGWNLMRKLTSRGANVLAQTLLQPGASDLTGSFRLYKRDVLEDL
Full Sequence
Protein Sequence     Length: 222     Download
MEAAAGGKRA YSIIVPTYNE RLNVALIVYL IFKHLPDVNF EIIIVDDGSP DGTQDIVKQL    60
QQVYGEDRVL LRARPRKLGL GTAYLHGLKH ASGEFVIIMD ADLSHHPKYL PSFIRKQKET    120
GADVVTGTRY VKNGGVHGWN LMRKLTSRGA NVLAQTLLQP GASDLTGSFR LYKRDVLEDL    180
ISSCVSKGYV FQMEMIVRAT RKGYHIEESL RNFKTWWVRD S* 
Functional Domains Download unfiltered results here
Cdd IDDomainE-ValueStartEndLengthDomain Description
cd04188DPG_synthase1.0e-3713208201+
pfam00535Glycos_transf_24.0e-3812180170+
cd04179DPM_DPG-synthase_like1.0e-7013199188+
cd06442DPM1_like5.0e-11213208196+
PLN02726PLN027261.0e-1531208209+
Annotations - NR Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
GenBankEEC76440.1042085209hypothetical protein OsI_14131 [Oryza sativa Indica Group]
RefSeqNP_001051751.1042085209Os03g0824400 [Oryza sativa (japonica cultivar-group)]
RefSeqNP_001140901.1012081208hypothetical protein LOC100272978 [Zea mays]
RefSeqXP_002285933.1022083209PREDICTED: hypothetical protein [Vitis vinifera]
RefSeqXP_002466177.1012081208hypothetical protein SORBIDRAFT_01g002910 [Sorghum bicolor]
Annotations - PDB Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
PDB3bcv_B0.00000004121368129A Chain A, Crystal Structure Of A Putative Glycosyltransferase From Bacteroides Fragilis
PDB3bcv_A0.00000004121368129A Chain A, Crystal Structure Of A Putative Glycosyltransferase From Bacteroides Fragilis
PDB2z86_D0.00000061211496196A Chain A, Crystal Structure Of Chondroitin Polymerase From Escherichia Coli Strain K4 (K4cp) Complexed With Udp-Glcua And Udp
PDB2z86_C0.00000061211496196A Chain A, Crystal Structure Of Chondroitin Polymerase From Escherichia Coli Strain K4 (K4cp) Complexed With Udp-Glcua And Udp
PDB2z86_B0.00000061211496196A Chain A, Crystal Structure Of Chondroitin Polymerase From Escherichia Coli Strain K4 (K4cp) Complexed With Udp-Glcua And Udp
Metabolic Pathways
Pathway NameReactionECProtein Name
dolichyl-diphosphooligosaccharide biosynthesis2.4.1.83-RXNEC-2.4.1.83dolichyl-phosphate β-D-mannosyltransferase
Hydropathy
EST Download unfiltered results here
HitLengthStartEndEValue
JG78902820612060
EB66856220812080
JG92928320812080
CA19056120812080
CB66243620542080
Orthologous Group
SpeciesID
Aquilegia coeruleaAquca_007_00839.1Aquca_007_00839.2
Arabidopsis lyrata889509
Arabidopsis thalianaAT1G20575.1
Brachypodium distachyonBradi2g19800.1
Brassica rapaBra025828Bra012235
Capsella rubellaCarubv10010457mCarubv10010118m
Chlamydomonas reinhardtiiCre03.g150950.t1.1
Citrus clementinaCiclev10003501m
Citrus sinensisorange1.1g026146m
Cucumis sativusCucsa.272070.1Cucsa.272070.2Cucsa.272070.3Cucsa.272070.4
Eucalyptus grandisEucgr.F01769.1
Fragaria vescamrna01849.1-v1.0-hybrid
Glycine maxGlyma13g24040.2Glyma07g32560.4Glyma07g32560.3Glyma07g32560.1Glyma13g24040.1
Gossypium raimondiiGorai.005G113700.2Gorai.005G113700.1Gorai.005G113700.3Gorai.005G113700.4Gorai.002G116900.2
Gorai.002G116900.1
Linum usitatissimumLus10013228Lus10030748
Malus domesticaMDP0000284475
Manihot esculentacassava4.1_014960mcassava4.1_014955m
Medicago truncatulaMedtr2g097220.1
Mimulus guttatusmgv1a012434m
Oryza sativaLOC_Os03g60939.1
Panicum virgatumPavirv00006084mPavirv00010356mPavirv00041144mPavirv00011250mPavirv00010359m
Physcomitrella patensPp1s182_58V6.1
Phaseolus vulgarisPhvul.003G057700.1
Picea abiesMA_10426906g0010MA_158782g0100.50.214MA_159042g1170
Populus trichocarpaPotri.005G250900.1Potri.002G010300.1Potri.005G250900.2
Prunus persicappa010139m
Ricinus communis30170.m014358
Setaria italicaSi039247mSi037228m
Selaginella moellendorffii98270
Sorghum bicolorSb01g002910.1
Thellungiella halophilaThhalv10008599m
Vitis viniferaGSVIVT01008672001
Volvox carteriVocar20000557m
Sequence Alignments  (This image is cropped. Click for full image.)
Phylogeny