Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00010445m |
Family | CE8 |
Protein Properties | Length: 348 Molecular Weight: 37929.2 Isoelectric Point: 8.8491 |
Chromosome | Chromosome/Scaffold: 003981 Start: 6535 End: 8259 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 60 | 337 | 0 |
EEFKTVQSAIDAVPAGNTEWIIVHLRSGVHNGKVVIPKNKPFIFVRGNGKGRTSISHESASPDNAESAAFTVNADNVIVFGISFRNTARAGLVNNQEIRS VSAMVAGDKVAFYHCAFYSPHHTLFDSAGRHYYESCYIQGNIDFIFGSGQSIFQCPEIFVKPDRRTEILGSITAQDRKVDDDTSGFVFLKGKVYGVGEVY LGRVTAPDSRVIFADTYLSKTINPAGWTTIGYTGSTDKVMLAEFNCTGPGSDAAKRVPWSRRFTVNEATKYLTIDFIN |
Full Sequence |
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Protein Sequence Length: 348 Download |
MAWPCLLPFL LLAAAAVLTS APSGTLAKSK LAKKSDDIVN GPLLTDKLKA KRTLIVGPDE 60 EFKTVQSAID AVPAGNTEWI IVHLRSGVHN GKVVIPKNKP FIFVRGNGKG RTSISHESAS 120 PDNAESAAFT VNADNVIVFG ISFRNTARAG LVNNQEIRSV SAMVAGDKVA FYHCAFYSPH 180 HTLFDSAGRH YYESCYIQGN IDFIFGSGQS IFQCPEIFVK PDRRTEILGS ITAQDRKVDD 240 DTSGFVFLKG KVYGVGEVYL GRVTAPDSRV IFADTYLSKT INPAGWTTIG YTGSTDKVML 300 AEFNCTGPGS DAAKRVPWSR RFTVNEATKY LTIDFINGKE WLPAYYY* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02432 | PLN02432 | 3.0e-70 | 61 | 342 | 283 | + putative pectinesterase | ||
PLN02665 | PLN02665 | 2.0e-70 | 42 | 345 | 312 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 7.0e-71 | 47 | 343 | 312 | + pectinesterase family protein | ||
PLN02497 | PLN02497 | 6.0e-83 | 62 | 342 | 287 | + probable pectinesterase | ||
PLN02480 | PLN02480 | 0 | 25 | 346 | 324 | + Probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACU23222.1 | 0 | 26 | 345 | 24 | 345 | unknown [Glycine max] |
GenBank | EAZ26679.1 | 0 | 20 | 289 | 20 | 287 | hypothetical protein OsJ_10583 [Oryza sativa Japonica Group] |
RefSeq | NP_001049912.1 | 0 | 20 | 347 | 20 | 345 | Os03g0309400 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001146436.1 | 0 | 36 | 347 | 36 | 346 | hypothetical protein LOC100280019 [Zea mays] |
RefSeq | XP_002457946.1 | 0 | 1 | 347 | 1 | 346 | hypothetical protein SORBIDRAFT_03g022950 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 1e-28 | 61 | 344 | 18 | 310 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 3e-23 | 61 | 342 | 14 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 0.0000000001 | 60 | 217 | 16 | 190 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 0.0000000001 | 60 | 217 | 16 | 190 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 0.0000000001 | 60 | 217 | 16 | 190 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |