Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00010581m |
Family | GH28 |
Protein Properties | Length: 418 Molecular Weight: 44340 Isoelectric Point: 7.2563 |
Chromosome | Chromosome/Scaffold: 005595 Start: 3190 End: 5104 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 27 | 359 | 0 |
TACSLDNAVFLVPAGRRYKVGAITFMGPCKARMIIQIQGTIVAPEEPSEWDPRSPRLWLLFSGLAGARIQGGGVIDGSGSKWWANSCKVNKSNPCRPAPT AVTIDSSRGVRVKGLRVQNAQQMHLTVYRSRNVRLAGVRIEAPEDSPNTDGIHVAESTAVSIQSCRIGTGDDCISIVNASFNIRMKNIDCGPGHGISIGS LGKDGAFAAVENVALDTARISRAQNGVRIKTWQGGAGYVRNVRFSNVAVDGVDHPIVIDQFYCDAARGSCCRNSTTSGVQVTNVAYLNIRGTSRRAEAIR FACSDAAPCTGIVLRDIDLRRSDGDGGEVQTVC |
Full Sequence |
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Protein Sequence Length: 418 Download |
MAKGLEEPEE EEGLTIGWEA FSSAWKTACS LDNAVFLVPA GRRYKVGAIT FMGPCKARMI 60 IQIQGTIVAP EEPSEWDPRS PRLWLLFSGL AGARIQGGGV IDGSGSKWWA NSCKVNKSNP 120 CRPAPTAVTI DSSRGVRVKG LRVQNAQQMH LTVYRSRNVR LAGVRIEAPE DSPNTDGIHV 180 AESTAVSIQS CRIGTGDDCI SIVNASFNIR MKNIDCGPGH GISIGSLGKD GAFAAVENVA 240 LDTARISRAQ NGVRIKTWQG GAGYVRNVRF SNVAVDGVDH PIVIDQFYCD AARGSCCRNS 300 TTSGVQVTNV AYLNIRGTSR RAEAIRFACS DAAPCTGIVL RDIDLRRSDG DGGEVQTVCN 360 CAIGFDYGRV SPAADCLRSS TCGGSLDHRP DDDDDGDGGK GKAVALTIPA PILHTEL* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 2.0e-76 | 13 | 356 | 348 | + polygalacturonase | ||
PLN03003 | PLN03003 | 4.0e-84 | 13 | 381 | 372 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 3.0e-95 | 34 | 360 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 1.0e-105 | 13 | 372 | 363 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 7.0e-127 | 13 | 381 | 370 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAD07736.1 | 0 | 19 | 384 | 98 | 459 | putative polygalacturonase [Oryza sativa Japonica Group] |
GenBank | EEC72414.1 | 0 | 19 | 384 | 98 | 459 | hypothetical protein OsI_05716 [Oryza sativa Indica Group] |
RefSeq | NP_001045783.1 | 0 | 19 | 384 | 125 | 486 | Os02g0130200 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002317091.1 | 0 | 12 | 379 | 44 | 405 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002453250.1 | 0 | 19 | 417 | 121 | 520 | hypothetical protein SORBIDRAFT_04g002530 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 7e-24 | 98 | 345 | 77 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 7e-24 | 98 | 345 | 77 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 7e-24 | 98 | 345 | 77 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 7e-24 | 98 | 345 | 77 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 7e-24 | 98 | 345 | 77 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FE647334 | 235 | 106 | 340 | 0 |
CB881820 | 196 | 96 | 291 | 0 |
FP038137 | 218 | 75 | 292 | 0 |
EY181291 | 254 | 34 | 287 | 0 |
CA929934 | 214 | 53 | 266 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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