Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00010604m |
Family | CBM22 |
Protein Properties | Length: 1100 Molecular Weight: 123751 Isoelectric Point: 6.9697 |
Chromosome | Chromosome/Scaffold: 005749 Start: 8700 End: 14847 |
Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM22 | 389 | 522 | 7e-29 |
VIKNPHFEDGLKNWSGRGCNICRHEFTAYGNVRPLNGSYFASATGRVHNWNGIQQEITGRVQRKVLYEINSSVRIFGSANDTEVRVTLWVQEYGRERYVG LAKNQASDKQWTHLKGRFLLHAPFSKAVIFIEGP | |||
CBM22 | 219 | 356 | 8.5e-31 |
IISNYDFSKGLHPWNPICCHAYVASQWSGFLDGIRGNSGENYAVVSKRTEHWQGLEQDITNRVSTGTAYVVSAFVRVDGNVQGQVEVKGTLRLQNTDGST HYNPVGSVLASKEKWNKLEGSFSLTNMPKHVVFYLEGP | |||
CBM22 | 49 | 187 | 4.7e-31 |
NIVSNSDFSEGLHLWQPNSCHAFVAVEGSGYHYGVRPHSGSSYAVLTHRTQSWQGLEQDITENVTLGTEYFITAYVRVHGEVHEPVGVKATLKFEEESSS TNYVSIARISASQECWEKMEGSFNLTTIPRRLVFYLEGP | |||
CBM22 | 557 | 697 | 2.1e-37 |
NLLHNSAFTRALAGWSPMGSCRLSIQTEAPHMLPSILKDCASQKHISGRYILATNRTEVWMGPSQVITDKLRLHVTYRVSAWVRAGSGGHGRHHVNVCLA VDNQWVNGGQVEADGDQWYEIKGAFKLEKQPSKVTAYVQGP | |||
GH10 | 755 | 1036 | 0 |
QTENSFPFGSCIARHNIENEDFAEFFVKNFNWAVFENELKWYHTEAEQGRLNYKDSDELLEFCEKHKIQVRGHCLFWEVEDAVQPWVRSLQGHHLMTAVQ NRLQSLLSRYKGRFRHHDVNNEMLHGSFYEDRLGRDIRAYMFREAHKLDPSAVLFVNDYNVEDGCDTKSTPEKFVEQVVDLQERGAPVGGIGVQGHISHP VGEIICDSLDKLAVLGLPIWITELDVTAENEHLRADDLEVFLREAFAHHAVGGIILWGFWEMFMFREHAHLVDADGTINEAG |
Full Sequence |
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Protein Sequence Length: 1100 Download |
MRRRCGWLSS LFRPRRGGRA LPQPDQPRPD SEPEVVDKRG ASNEVVMENI VSNSDFSEGL 60 HLWQPNSCHA FVAVEGSGYH YGVRPHSGSS YAVLTHRTQS WQGLEQDITE NVTLGTEYFI 120 TAYVRVHGEV HEPVGVKATL KFEEESSSTN YVSIARISAS QECWEKMEGS FNLTTIPRRL 180 VFYLEGPPPG VDLLIDSVTI SYKKTERSVS STIGGTEGII SNYDFSKGLH PWNPICCHAY 240 VASQWSGFLD GIRGNSGENY AVVSKRTEHW QGLEQDITNR VSTGTAYVVS AFVRVDGNVQ 300 GQVEVKGTLR LQNTDGSTHY NPVGSVLASK EKWNKLEGSF SLTNMPKHVV FYLEGPPAGV 360 DLIIDSVNIS CSGHKQSKEV KVKSEVETVI KNPHFEDGLK NWSGRGCNIC RHEFTAYGNV 420 RPLNGSYFAS ATGRVHNWNG IQQEITGRVQ RKVLYEINSS VRIFGSANDT EVRVTLWVQE 480 YGRERYVGLA KNQASDKQWT HLKGRFLLHA PFSKAVIFIE GPPAGIDILV DGLVLSPARK 540 LQATPCPKIE NVLYGVNLLH NSAFTRALAG WSPMGSCRLS IQTEAPHMLP SILKDCASQK 600 HISGRYILAT NRTEVWMGPS QVITDKLRLH VTYRVSAWVR AGSGGHGRHH VNVCLAVDNQ 660 WVNGGQVEAD GDQWYEIKGA FKLEKQPSKV TAYVQGPPSG VDLRVMDLQI YPVDRKARFE 720 YLKEKTDRVR KRDVVLKFQG SNAVNLLGSS VRIQQTENSF PFGSCIARHN IENEDFAEFF 780 VKNFNWAVFE NELKWYHTEA EQGRLNYKDS DELLEFCEKH KIQVRGHCLF WEVEDAVQPW 840 VRSLQGHHLM TAVQNRLQSL LSRYKGRFRH HDVNNEMLHG SFYEDRLGRD IRAYMFREAH 900 KLDPSAVLFV NDYNVEDGCD TKSTPEKFVE QVVDLQERGA PVGGIGVQGH ISHPVGEIIC 960 DSLDKLAVLG LPIWITELDV TAENEHLRAD DLEVFLREAF AHHAVGGIIL WGFWEMFMFR 1020 EHAHLVDADG TINEAGRRYL ALKQEWLTSV NGNVNHQGEF NFRGYHGSYT MEVDTLSGKV 1080 VRSFVVDEHS PIQVITLNI* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam02018 | CBM_4_9 | 1.0e-14 | 389 | 524 | 138 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
pfam02018 | CBM_4_9 | 4.0e-17 | 219 | 358 | 141 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
COG3693 | XynA | 2.0e-41 | 747 | 1013 | 291 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
pfam00331 | Glyco_hydro_10 | 2.0e-72 | 757 | 1043 | 307 | + Glycosyl hydrolase family 10. | ||
smart00633 | Glyco_10 | 1.0e-74 | 793 | 1038 | 267 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
GO:0016798 | hydrolase activity, acting on glycosyl bonds |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAZ03745.1 | 0 | 36 | 1099 | 19 | 1082 | hypothetical protein OsI_25875 [Oryza sativa Indica Group] |
GenBank | EAZ39688.1 | 0 | 36 | 1099 | 19 | 1082 | hypothetical protein OsJ_24125 [Oryza sativa Japonica Group] |
RefSeq | NP_001059561.1 | 0 | 1 | 1099 | 1 | 1101 | Os07g0456700 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002301133.1 | 0 | 48 | 1099 | 1 | 1049 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002459803.1 | 0 | 1 | 1099 | 1 | 1098 | hypothetical protein SORBIDRAFT_02g010990 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1i1x_A | 2e-30 | 762 | 1033 | 18 | 289 | A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of Soybean Beta-Amylase |
PDB | 1i1w_A | 2e-30 | 762 | 1033 | 18 | 289 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
PDB | 2bnj_A | 4e-30 | 762 | 1033 | 18 | 289 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
PDB | 1gor_A | 1e-29 | 762 | 1033 | 18 | 289 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
PDB | 1goq_A | 1e-29 | 762 | 1033 | 18 | 289 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GO850973 | 328 | 681 | 1008 | 0 |
GT037746 | 297 | 804 | 1100 | 0 |
JG785760 | 245 | 640 | 884 | 0 |
JG785760 | 115 | 485 | 584 | 0.039 |
JG785760 | 46 | 324 | 369 | 0.054 |
Sequence Alignments (This image is cropped. Click for full image.) |
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