Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00010684m |
Family | GH28 |
Protein Properties | Length: 424 Molecular Weight: 44393 Isoelectric Point: 7.4537 |
Chromosome | Chromosome/Scaffold: 004903 Start: 5585 End: 7147 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 56 | 375 | 0 |
RAACGSTAGNSTLVFPKGTFAVGAVQFEGLCANGDAPAVVIHGVLQPCAGGSGCHLSDDAWITFSSLTNLLVTGDGTLDGQGHRNGKAKSKTTTLVFEDV TNSTLRGLAFVNSRGFHVNLRRCTRVVAEGLGIHAPAASRNTDGVHVGHSRHVRILDSVIGSGDDCVSIGPGSVDVVVSGVTCGPGHGLSVGSLGKDDGE QDVRGLVVRNCTVKGTTNGVRIKTWPGSPPSRASNITFEDIAMANVTNPIIIDQRYCPHDRCSDADKISDVTFRRIEGTSSGPLAVRLLCSEERPCTGVR LDGINLTCGDVPCRSEFSNV |
Full Sequence |
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Protein Sequence Length: 424 Download |
MASIPKAFVV FFAVAVLLCG GHAHRKDHTA SVYDVTEYGA APSNRDNRDA FLAAWRAACG 60 STAGNSTLVF PKGTFAVGAV QFEGLCANGD APAVVIHGVL QPCAGGSGCH LSDDAWITFS 120 SLTNLLVTGD GTLDGQGHRN GKAKSKTTTL VFEDVTNSTL RGLAFVNSRG FHVNLRRCTR 180 VVAEGLGIHA PAASRNTDGV HVGHSRHVRI LDSVIGSGDD CVSIGPGSVD VVVSGVTCGP 240 GHGLSVGSLG KDDGEQDVRG LVVRNCTVKG TTNGVRIKTW PGSPPSRASN ITFEDIAMAN 300 VTNPIIIDQR YCPHDRCSDA DKISDVTFRR IEGTSSGPLA VRLLCSEERP CTGVRLDGIN 360 LTCGDVPCRS EFSNVRGPLA PVVAQAPSPA PAARREEEEA DVTSSVTQQL GRLTRWLPFT 420 VRG* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 2.0e-62 | 29 | 361 | 342 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 5.0e-65 | 29 | 370 | 359 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 3.0e-65 | 32 | 361 | 347 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 6.0e-84 | 59 | 365 | 318 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 2.0e-95 | 20 | 376 | 374 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAD62225.1 | 0 | 1 | 405 | 1 | 423 | putative Exopolygalacturonase precursor [Oryza sativa Japonica Group] |
EMBL | CBI22963.1 | 0 | 30 | 362 | 29 | 376 | unnamed protein product [Vitis vinifera] |
GenBank | EAZ01129.1 | 0 | 1 | 405 | 1 | 411 | hypothetical protein OsI_23157 [Oryza sativa Indica Group] |
GenBank | EEE65794.1 | 0 | 1 | 405 | 1 | 423 | hypothetical protein OsJ_21499 [Oryza sativa Japonica Group] |
RefSeq | XP_002444632.1 | 0 | 19 | 376 | 22 | 383 | hypothetical protein SORBIDRAFT_07g025130 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 3e-20 | 106 | 337 | 96 | 339 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 2e-18 | 126 | 371 | 79 | 328 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-18 | 126 | 371 | 79 | 328 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-18 | 126 | 371 | 79 | 328 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 2e-18 | 126 | 371 | 79 | 328 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |