Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00010764m |
Family | CBM43 |
Protein Properties | Length: 493 Molecular Weight: 52779.7 Isoelectric Point: 4.9679 |
Chromosome | Chromosome/Scaffold: 004587 Start: 844 End: 4491 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 364 | 445 | 3.1e-29 |
CVANSSAPHSALKHSLDWACGPGSANCSAIQPGQPCYESDNIVAVASYALNDYYHRTQASGGTCSFNGTAMMTSTDPSHDSC | |||
GH17 | 25 | 346 | 0 |
VGITIGNEMSNLPSATDIVAILKEKKIQHVRLIDSNHQMLTALANTGIEVMVGVPNDQLLCVGQSRSTAADWINKNVAAYVPATNITYIAVGDEVLTNIP NAALVLVPALQFLQSALLAANLNTQVKISSPHSMDMISKAFPPSTATFNSTWNTVMSQYLRFLKDTGSSFMLNAQPYYGYVGGQGVFPLEYALFRSLNPN SQISDPNTNLFYTNMFDAIIDATYNSIQAMNFTEIPVLVTASGWPWRGGPNEKAATVDNALAYNTNLIRHVLNNSGTPSQPMNQSSTYIFELFNEDLRSG PESEKSWGIMFPNTTTVYSLSF |
Full Sequence |
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Protein Sequence Length: 493 Download |
MSPFRPHGVV MLLMLMVFDV SGAFVGITIG NEMSNLPSAT DIVAILKEKK IQHVRLIDSN 60 HQMLTALANT GIEVMVGVPN DQLLCVGQSR STAADWINKN VAAYVPATNI TYIAVGDEVL 120 TNIPNAALVL VPALQFLQSA LLAANLNTQV KISSPHSMDM ISKAFPPSTA TFNSTWNTVM 180 SQYLRFLKDT GSSFMLNAQP YYGYVGGQGV FPLEYALFRS LNPNSQISDP NTNLFYTNMF 240 DAIIDATYNS IQAMNFTEIP VLVTASGWPW RGGPNEKAAT VDNALAYNTN LIRHVLNNSG 300 TPSQPMNQSS TYIFELFNED LRSGPESEKS WGIMFPNTTT VYSLSFEDVA TTIPESPALR 360 GMFCVANSSA PHSALKHSLD WACGPGSANC SAIQPGQPCY ESDNIVAVAS YALNDYYHRT 420 QASGGTCSFN GTAMMTSTDP SHDSCIFAGS TGANGSNGGT ASGPVSPDSF ASKSQSCWLT 480 HLAAALLLIL VM* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 0.0003 | 251 | 334 | 87 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 6.0e-16 | 364 | 434 | 80 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 2.0e-33 | 363 | 447 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 3.0e-70 | 25 | 346 | 322 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EEE67465.1 | 0 | 22 | 492 | 85 | 555 | hypothetical protein OsJ_24859 [Oryza sativa Japonica Group] |
RefSeq | NP_001060087.1 | 0 | 18 | 492 | 167 | 641 | Os07g0577300 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001131285.1 | 0 | 5 | 488 | 5 | 485 | hypothetical protein LOC100192598 [Zea mays] |
RefSeq | NP_001149308.1 | 0 | 1 | 492 | 1 | 492 | glucan endo-1,3-beta-glucosidase 4 [Zea mays] |
RefSeq | XP_002460914.1 | 0 | 1 | 492 | 1 | 492 | hypothetical protein SORBIDRAFT_02g037380 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2cyg_A | 0 | 25 | 346 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 1ghs_B | 0 | 25 | 346 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 1ghs_A | 0 | 25 | 346 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 3f55_D | 0 | 25 | 346 | 2 | 315 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 3f55_C | 0 | 25 | 346 | 2 | 315 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |