Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00010813m |
Family | GT47 |
Protein Properties | Length: 412 Molecular Weight: 46571.6 Isoelectric Point: 9.5293 |
Chromosome | Chromosome/Scaffold: 084107 Start: 584 End: 3835 |
Description | Exostosin family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 87 | 364 | 0 |
ERSFKVYIYPDGDPKTFYQTPRKLTGKYASEGYFFQNIRESRFRTDDPDKAHLFFVPISPHKMRGKGTSYENMTVIVKGYVEGLINKYPYWNRTLGADHF FVTCHDVGVRAFEGLPFMVKNSIRVVCSPSYNVDFIPHKDIALPQVLQPFALPEGGNDIENRTILGFWAGHRNSKIRVILARVWENDTELAISNNRISRA IGELVYQKQFYRTKFCICPGGSQVNSARISDSIHYGCVPVILSDYYDLPFTDALDWRKFAVVLRERDVYQLKSILKSI |
Full Sequence |
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Protein Sequence Length: 412 Download |
MAGRVPGAAA SSPLPRALLL LAALALFTLS FLSLRSLRPA AGPSFPTAGV SFSLGAADKP 60 RPVLPLQPSS SVYHSPEAFA AGYAEMERSF KVYIYPDGDP KTFYQTPRKL TGKYASEGYF 120 FQNIRESRFR TDDPDKAHLF FVPISPHKMR GKGTSYENMT VIVKGYVEGL INKYPYWNRT 180 LGADHFFVTC HDVGVRAFEG LPFMVKNSIR VVCSPSYNVD FIPHKDIALP QVLQPFALPE 240 GGNDIENRTI LGFWAGHRNS KIRVILARVW ENDTELAISN NRISRAIGEL VYQKQFYRTK 300 FCICPGGSQV NSARISDSIH YGCVPVILSD YYDLPFTDAL DWRKFAVVLR ERDVYQLKSI 360 LKSISQEEFV SLHKSLVQVQ KHFVWHSPPV PYDAFHMVMY ELWLRHNVIK Y* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 7.0e-60 | 86 | 364 | 297 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACG33948.1 | 0 | 1 | 411 | 1 | 403 | exostosin-like [Zea mays] |
RefSeq | NP_001046127.1 | 0 | 27 | 411 | 29 | 402 | Os02g0187200 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001132213.1 | 0 | 1 | 411 | 1 | 403 | hypothetical protein LOC100193644 [Zea mays] |
RefSeq | NP_001147269.1 | 0 | 1 | 411 | 1 | 403 | exostosin-like [Zea mays] |
RefSeq | XP_002453426.1 | 0 | 1 | 411 | 1 | 403 | hypothetical protein SORBIDRAFT_04g005890 [Sorghum bicolor] |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
xylogalacturonan biosynthesis | RXN-9589 | EC-2.4.2.41 | xylogalacturonan β-1,3-xylosyltransferase |