Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00010844m |
Family | AA5 |
Protein Properties | Length: 623 Molecular Weight: 67423.1 Isoelectric Point: 7.7884 |
Chromosome | Chromosome/Scaffold: 087123 Start: 954 End: 3362 |
Description | glyoxal oxidase-related protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA5 | 81 | 621 | 0 |
APTAVAQDTIVLPVDNAAGYPGAWSMISENAGVSAMHLVIMRNDKAIMFDTVTTGPSLLRLPKGNCRLDLRSREPGTEDCAAHAVEFDFATGGVRALKIL TDVWCSSGALDAEGNLVQTGGYFEGEKVVRYLSPCGNCDWREFPASLAEGRWYGTQQILPDGRSIVLGGRRAFSYEFVPAEGQKNAQANNMQLLRDTTDD VENNLYPFVHLLTDGTLFIFANDRSVVFDYRAGQVVRDLPALQGGGRNYPASGMSALLPLDLRRGDVLSPEVIVCGGTPKNAFKFGETNVFNAALRDCAR INPLKPGARWAIDQMPVARTMGDLLILPTGDLLMLNGAAKGCSGWGFGRQPVLTPLLYSPRQPRGSRFRALAATTIARMYHATSALLPDATVLVAGSNTN SAYNFSGVDFPTEVRVERFTPPYLSPERAANRPAIEMATVPAGGMAYGARFSFQFSMPPMMHVTDADLKVTMYAPSFTTHGYSMNQRLLVLAVSSFMPRG PHIYEITVDAPPKPELAPPGYYLLYVMARGVPSKAAWVKVH |
Full Sequence |
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Protein Sequence Length: 623 Download |
MGPLLRAAVL AGALLALAAA GEAHTVSDFL NIFRPRNEHD YFHNANQGQE EDVMPRASDQ 60 QSLVTAPVSR SGLMKVPARS APTAVAQDTI VLPVDNAAGY PGAWSMISEN AGVSAMHLVI 120 MRNDKAIMFD TVTTGPSLLR LPKGNCRLDL RSREPGTEDC AAHAVEFDFA TGGVRALKIL 180 TDVWCSSGAL DAEGNLVQTG GYFEGEKVVR YLSPCGNCDW REFPASLAEG RWYGTQQILP 240 DGRSIVLGGR RAFSYEFVPA EGQKNAQANN MQLLRDTTDD VENNLYPFVH LLTDGTLFIF 300 ANDRSVVFDY RAGQVVRDLP ALQGGGRNYP ASGMSALLPL DLRRGDVLSP EVIVCGGTPK 360 NAFKFGETNV FNAALRDCAR INPLKPGARW AIDQMPVART MGDLLILPTG DLLMLNGAAK 420 GCSGWGFGRQ PVLTPLLYSP RQPRGSRFRA LAATTIARMY HATSALLPDA TVLVAGSNTN 480 SAYNFSGVDF PTEVRVERFT PPYLSPERAA NRPAIEMATV PAGGMAYGAR FSFQFSMPPM 540 MHVTDADLKV TMYAPSFTTH GYSMNQRLLV LAVSSFMPRG PHIYEITVDA PPKPELAPPG 600 YYLLYVMARG VPSKAAWVKV HK* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam09118 | DUF1929 | 1.0e-25 | 512 | 620 | 110 | + Domain of unknown function (DUF1929). Members of this family adopt a secondary structure consisting of a bundle of seven, mostly antiparallel, beta-strands surrounding a hydrophobic core. The 7 strands are arranged in 2 sheets, in a Greek-key topology. Their precise function, has not, as yet, been defined, though they are mostly found in sugar-utilising enzymes, such as galactose oxidase. | ||
cd02851 | E_set_GO_C | 4.0e-28 | 509 | 620 | 113 | + C-terminal Early set domain associated with the catalytic domain of galactose oxidase. E or "early" set domains are associated with the catalytic domain of galactose oxidase at the C-terminal end. Galactose oxidase is an extracellular monomeric enzyme which catalyzes the stereospecific oxidation of a broad range of primary alcohol substrates and possesses a unique mononuclear copper site essential for catalyzing a two-electron transfer reaction during the oxidation of primary alcohols to corresponding aldehydes. The second redox active center necessary for the reaction was found to be situated at a tyrosine residue. The C-terminal domain of galactose oxidase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase, among others. | ||
pfam07250 | Glyoxal_oxid_N | 6.0e-123 | 116 | 357 | 245 | + Glyoxal oxidase N-terminus. This family represents the N-terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyzes the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACR33858.1 | 0 | 1 | 622 | 1 | 618 | unknown [Zea mays] |
GenBank | EEC71262.1 | 0 | 21 | 622 | 19 | 624 | hypothetical protein OsI_03252 [Oryza sativa Indica Group] |
RefSeq | NP_001043851.1 | 0 | 21 | 622 | 19 | 624 | Os01g0677000 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001148082.1 | 0 | 1 | 621 | 1 | 619 | glyoxal oxidase [Zea mays] |
RefSeq | XP_002456130.1 | 0 | 1 | 622 | 1 | 621 | hypothetical protein SORBIDRAFT_03g031030 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2eic_A | 0.00000000000003 | 182 | 622 | 225 | 639 | A Chain A, Crystal Structure Of Galactose Oxidase Mutant W290f |
PDB | 2wq8_A | 0.00000000000003 | 182 | 622 | 247 | 661 | A Chain A, Glycan Labelling Using Engineered Variants Of Galactose Oxidase Obtained By Directed Evolution |
PDB | 1t2x_A | 0.00000000000004 | 182 | 622 | 225 | 639 | A Chain A, Glactose Oxidase C383s Mutant Identified By Directed Evolution |
PDB | 2eib_A | 0.00000000000007 | 182 | 622 | 225 | 639 | A Chain A, Crystal Structure Of Galactose Oxidase, W290h Mutant |
PDB | 2vz3_A | 0.0000000000001 | 182 | 622 | 225 | 639 | A Chain A, Crystal Structure Of Galactose Oxidase, W290h Mutant |