Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00010885m |
Family | AA7 |
Protein Properties | Length: 544 Molecular Weight: 59442.1 Isoelectric Point: 9.2677 |
Chromosome | Chromosome/Scaffold: 088229 Start: 623 End: 2254 |
Description | FAD-binding Berberine family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA7 | 70 | 304 | 0 |
TVRPLCIVTPTNASHAQATVLCGRRHGVRVRVRSGGHDYEGLSYRSVQPETFALVDLANFRSVRVDRARATAWVDSGATVGELYYAVAKASGDRLAFPAG LCPTIGVGGHFSGGGFGLLLRKYGIAVDHVIDAVLVDAQGRLLDKKAIGREVFWAIRGGGGESFGIVLSWRVRLVPVPPKVASFIVPVSVNDGAVDVLTK WQEVGPALPDDLFIRVWVMNGVASFQSQYLGTCDA |
Full Sequence |
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Protein Sequence Length: 544 Download |
MAVLRLRALV LTVCLVCFYA PAPSSASSGD FLHCLSASIP SELIFTQSSP SFTSVLTSYI 60 RNPRFSTPGT VRPLCIVTPT NASHAQATVL CGRRHGVRVR VRSGGHDYEG LSYRSVQPET 120 FALVDLANFR SVRVDRARAT AWVDSGATVG ELYYAVAKAS GDRLAFPAGL CPTIGVGGHF 180 SGGGFGLLLR KYGIAVDHVI DAVLVDAQGR LLDKKAIGRE VFWAIRGGGG ESFGIVLSWR 240 VRLVPVPPKV ASFIVPVSVN DGAVDVLTKW QEVGPALPDD LFIRVWVMNG VASFQSQYLG 300 TCDALLPVMR GRFPELGMNR SHCREMSWAE SVLYVWVGSG QPIPVTDLLN RTTSMDTSNK 360 GTSDYVRRAI PRDVWAEIFG WLAKPDPGIM ILDPYGGAIS AVPEAATPFP HRGGVLYNIQ 420 YINNWAAGND GEPNVRWIRD LYAFMAPYVS KNPREAYFNY RDLDLGRNVV VGNVSSYEAG 480 KVWGEKYFKG NYKRLALAKG KIDPDDYFRN EQSIPPLVPV SFISNRVPDS VDGHKVYGVK 540 QKI* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG0277 | GlcD | 5.0e-7 | 123 | 517 | 428 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
pfam01565 | FAD_binding_4 | 4.0e-8 | 73 | 213 | 142 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. | ||
pfam08031 | BBE | 5.0e-16 | 456 | 515 | 60 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. |
Gene Ontology | |
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GO Term | Description |
GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
GO:0016491 | oxidoreductase activity |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAD53702.1 | 0 | 1 | 518 | 3 | 520 | putative CPRD2 [Oryza sativa Japonica Group] |
GenBank | EAZ01292.1 | 0 | 1 | 518 | 3 | 520 | hypothetical protein OsI_23321 [Oryza sativa Indica Group] |
RefSeq | NP_001057833.1 | 0 | 1 | 518 | 8 | 525 | Os06g0549900 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002438542.1 | 0 | 1 | 518 | 3 | 523 | hypothetical protein SORBIDRAFT_10g021690 [Sorghum bicolor] |
RefSeq | XP_002438543.1 | 0 | 10 | 517 | 12 | 525 | hypothetical protein SORBIDRAFT_10g021700 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 4dns_B | 0 | 20 | 518 | 1 | 497 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 4dns_A | 0 | 20 | 518 | 1 | 497 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsj_B | 0 | 23 | 518 | 3 | 497 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsj_A | 0 | 23 | 518 | 3 | 497 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsh_A | 0 | 23 | 518 | 3 | 497 | A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
cannabinoid biosynthesis | RXN-7854 | EC-1.21.3 | tetrahydrocannabinolic acid synthase |