y
Basic Information | |
---|---|
Species | Panicum virgatum |
Cazyme ID | Pavirv00011031m |
Family | AA1 |
Protein Properties | Length: 262 Molecular Weight: 28603.3 Isoelectric Point: 5.8097 |
Chromosome | Chromosome/Scaffold: 085435 Start: 2999 End: 4143 |
Description | laccase 7 |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
AA1 | 2 | 246 | 0 |
PQLPPPTQNNDTATAFRFLSNLTALVLPGKPTVPLSVDTRMFVTVGLGNGDCQPKQTLCNTTDGTRPRIFSSSMNNASFLLPDAGSPSMLQAHYDGNASG VYTRDFPDRPPVIFDYTADASDTDELKYTTKSTKVRTLRYNETVEMVLQNTRLIAKESHPMHLHGFNFFVLAQGFGNYDEAAAAPGFKFNLVNPQERNTV AVPTGGWAVIRFVANNPGMWFMHCHFDAHLDLGLGMVFEVQDGPT |
Full Sequence |
---|
Protein Sequence Length: 262 Download |
TPQLPPPTQN NDTATAFRFL SNLTALVLPG KPTVPLSVDT RMFVTVGLGN GDCQPKQTLC 60 NTTDGTRPRI FSSSMNNASF LLPDAGSPSM LQAHYDGNAS GVYTRDFPDR PPVIFDYTAD 120 ASDTDELKYT TKSTKVRTLR YNETVEMVLQ NTRLIAKESH PMHLHGFNFF VLAQGFGNYD 180 EAAAAPGFKF NLVNPQERNT VAVPTGGWAV IRFVANNPGM WFMHCHFDAH LDLGLGMVFE 240 VQDGPTAETS VPPPPLDLPH C* 300 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02191 | PLN02191 | 4.0e-26 | 74 | 239 | 172 | + L-ascorbate oxidase | ||
PLN02604 | PLN02604 | 3.0e-30 | 61 | 240 | 184 | + oxidoreductase | ||
TIGR03388 | ascorbase | 8.0e-35 | 2 | 240 | 247 | + L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases. | ||
pfam07731 | Cu-oxidase_2 | 1.0e-43 | 106 | 245 | 143 | + Multicopper oxidase. This entry contains many divergent copper oxidase-like domains that are not recognised by the pfam00394 model. | ||
TIGR03389 | laccase | 6.0e-93 | 2 | 261 | 261 | + laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate. |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0005507 | copper ion binding |
GO:0016491 | oxidoreductase activity |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABA97328.1 | 0 | 11 | 261 | 413 | 657 | laccase family protein, putative [Oryza sativa (japonica cultivar-group)] |
GenBank | EEC78752.1 | 0 | 11 | 261 | 332 | 576 | hypothetical protein OsI_18967 [Oryza sativa Indica Group] |
GenBank | EEE62822.1 | 0 | 11 | 261 | 299 | 543 | hypothetical protein OsJ_17625 [Oryza sativa Japonica Group] |
RefSeq | NP_001066518.1 | 0 | 11 | 261 | 332 | 576 | Os12g0259800 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002442097.1 | 0 | 1 | 261 | 322 | 576 | hypothetical protein SORBIDRAFT_08g011530 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1asq_B | 2e-24 | 111 | 239 | 393 | 521 | A Chain A, Crystal Structure Of A Family Gh-19 Chitinase From Rye Seeds |
PDB | 1asq_A | 2e-24 | 111 | 239 | 393 | 521 | A Chain A, Crystal Structure Of A Family Gh-19 Chitinase From Rye Seeds |
PDB | 1asp_B | 2e-24 | 111 | 239 | 393 | 521 | A Chain A, Crystal Structure Of A Family Gh-19 Chitinase From Rye Seeds |
PDB | 1asp_A | 2e-24 | 111 | 239 | 393 | 521 | A Chain A, Crystal Structure Of A Family Gh-19 Chitinase From Rye Seeds |
PDB | 1aso_B | 2e-24 | 111 | 239 | 393 | 521 | A Chain A, Crystal Structure Of A Family Gh-19 Chitinase From Rye Seeds |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
FL884779 | 215 | 1 | 215 | 0 |
EG377960 | 233 | 30 | 261 | 0 |
FL884778 | 175 | 88 | 262 | 0 |
GD020578 | 176 | 87 | 262 | 0 |
FL884779 | 22 | 214 | 235 | 0.036 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|