CAZyme Information

Basic Information
SpeciesPanicum virgatum
Cazyme IDPavirv00011082m
FamilyGT4
Protein PropertiesLength: 492 Molecular Weight: 55084.1 Isoelectric Point: 10.1232
ChromosomeChromosome/Scaffold: 088029 Start: 298 End: 3514
Descriptionsulfoquinovosyldiacylglycerol 2
View CDS
External Links
CAZyDB
Signature Domain  Download full data set without filtering
FamilyStartEndEvalue
GT42764264.1e-35
  NGEPEKPLILYVGRLGVEKSLDFLKRVMDRLPGSRIAFIGDGPFRAELEQMFSGMPAVFTGTLQGEELSQAYASGDVFVMPSESETLGFVVLEAMSSGVP
  VVGARAGGIPDIIPEDQEGKTSFLYTPGDVDDCVSKIERLLSCEELREMMG
Full Sequence
Protein Sequence     Length: 492     Download
MAAAAVVPRP PPSLPTRAFP SSSSTSCSSR RYPLRLRRSM PRPLVCAAAS SSVWMPDPDL    60
EPEPARDDQP APESRPRRIA LFVEPSPFAY VSGYKNRFQN FIKYLREMGD EVIVVTTHEG    120
VPQEFHGAKL IGSWSFPCPW YQKVPLSLAL SPRIIGEVAR FKPDIIHASS PGIMVFGALI    180
IAKLLCVPLV MSYHTHVPIY IPRYTFSWLV KPMWLIIKFL HRAADLTLVP SVAIGRDLQA    240
ARVTAANKIR LWNKGVDSES FHPRFRNKEM RSRLTNGEPE KPLILYVGRL GVEKSLDFLK    300
RVMDRLPGSR IAFIGDGPFR AELEQMFSGM PAVFTGTLQG EELSQAYASG DVFVMPSESE    360
TLGFVVLEAM SSGVPVVGAR AGGIPDIIPE DQEGKTSFLY TPGDVDDCVS KIERLLSCEE    420
LREMMGRAAR KEMEKFDWRA ATRKIRNEQY SAAIWFWRKK RAQLLRPVQW VVRRLLRPTM    480
PGAGNTVAKQ S* 
Functional Domains Download unfiltered results here
Cdd IDDomainE-ValueStartEndLengthDomain Description
cd03798GT1_wlbH_like2.0e-5079453394+
TIGR00032argG5.0e-6778437372+
cd03801GT1_YqgM_like6.0e-6878446379+
TIGR00009L281.0e-12078450376+
PLN02871PLN02871047475429+
Gene Ontology
GO TermDescription
GO:0009058biosynthetic process
Annotations - NR Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
GenBankACN35313.101649116497unknown [Zea mays]
RefSeqNP_001058670.103247930470Os07g0100300 [Oryza sativa (japonica cultivar-group)]
RefSeqXP_002278868.107447726429PREDICTED: hypothetical protein [Vitis vinifera]
RefSeqXP_002309122.107447627429predicted protein [Populus trichocarpa]
RefSeqXP_002459190.1014911500hypothetical protein SORBIDRAFT_02g000240 [Sorghum bicolor]
Annotations - PDB Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
PDB2jjm_L0.000000000000008309436242369A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From Bacillus Anthracis Orf Ba1558.
PDB2jjm_K0.000000000000008309436242369A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From Bacillus Anthracis Orf Ba1558.
PDB2jjm_J0.000000000000008309436242369A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From Bacillus Anthracis Orf Ba1558.
PDB2jjm_I0.000000000000008309436242369A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From Bacillus Anthracis Orf Ba1558.
PDB2jjm_H0.000000000000008309436242369A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From Bacillus Anthracis Orf Ba1558.
Hydropathy
EST Download unfiltered results here
HitLengthStartEndEValue
HO8131183191264440
DV7116653001574560
CB618038260963550
DC8855572861364210
CB6180412551033570
Orthologous Group
SpeciesID
Aquilegia coeruleaAquca_004_00305.1Aquca_053_00022.3Aquca_053_00022.2Aquca_053_00022.1
Arabidopsis lyrata860579323188
Arabidopsis thalianaAT5G01220.1AT3G45100.2AT3G45100.1
Brachypodium distachyonBradi1g59860.1Bradi2g02800.1Bradi1g67200.1Bradi1g32610.1
Brassica rapaBra009633Bra005694Bra009589
Carica papayaevm.model.supercontig_163.3evm.model.supercontig_65.21
Capsella rubellaCarubv10000742mCarubv10019008m
Chlamydomonas reinhardtiiCre01.g038550.t1.3Cre16.g689150.t1.2Cre01.g006800.t1.3
Citrus clementinaCiclev10011473mCiclev10001141mCiclev10001076m
Citrus sinensisorange1.1g022615morange1.1g017114morange1.1g016648morange1.1g009759morange1.1g027511m
Cucumis sativusCucsa.176160.1Cucsa.143020.1
Eucalyptus grandisEucgr.A00516.1Eucgr.J00902.1
Fragaria vescamrna18817.1-v1.0-hybridmrna24819.1-v1.0-hybrid
Glycine maxGlyma03g14200.1Glyma01g27840.1Glyma18g42540.1Glyma07g17680.4Glyma07g17680.3
Glyma07g17680.2Glyma07g17680.1Glyma20g12140.9Glyma20g12140.8Glyma20g12140.7
Glyma20g12140.6Glyma20g12140.5Glyma20g12140.4Glyma20g12140.3Glyma20g12140.2
Glyma20g12140.10Glyma13g25060.1
Gossypium raimondiiGorai.012G112200.2Gorai.012G112200.1Gorai.002G261700.2Gorai.002G261700.6Gorai.002G261700.4
Gorai.002G261700.3Gorai.002G261700.1Gorai.003G143800.9Gorai.003G143800.8Gorai.003G143800.7
Gorai.003G143800.6Gorai.003G143800.5Gorai.003G143800.4Gorai.003G143800.3Gorai.003G143800.2
Gorai.003G143800.10Gorai.003G143800.1
Linum usitatissimumLus10004832Lus10002499Lus10024892Lus10022925
Malus domesticaMDP0000899469MDP0000143617MDP0000297386MDP0000273680MDP0000203472
MDP0000184748MDP0000198677
Manihot esculentacassava4.1_007989mcassava4.1_005643mcassava4.1_032287m
Medicago truncatulaMedtr4g015260.1Medtr7g067340.1
Mimulus guttatusmgv1a004620mmgv1a004551mmgv1a006150mmgv1a006148m
Oryza sativaLOC_Os01g04920.1LOC_Os07g01030.1LOC_Os03g15840.1LOC_Os07g16960.1
Panicum virgatumPavirv00023556mPavirv00064963mPavirv00000330mPavirv00022111mPavirv00063251m
Pavirv00030308mPavirv00006595mPavirv00056553mPavirv00006877m
Physcomitrella patensPp1s24_194V6.1Pp1s106_103V6.1
Phaseolus vulgarisPhvul.010G005100.1Phvul.008G106900.1Phvul.005G132400.1Phvul.002G226400.1
Picea abiesMA_158718g0080MA_60607g0010MA_159042g1330MA_159118g0680MA_159090g0090
MA_159042g1140
Populus trichocarpaPotri.016G112600.4Potri.016G112600.3Potri.016G112600.2Potri.016G112600.1Potri.006G097600.3
Potri.006G097600.2Potri.006G097600.1Potri.016G130000.1
Prunus persicappa004263mppa005676mppa018035m
Ricinus communis35899.m00002429969.m00027234675.m00002848584.m00001330418.m000015
32791.m00002229638.m00053127698.m000067
Setaria italicaSi020690mSi001496mSi035897mSi035683m
Selaginella moellendorffii170091406541
Sorghum bicolorSb02g000240.1Sb03g006480.1Sb01g040150.1Sb02g008800.1
Thellungiella halophilaThhalv10013276mThhalv10002532m
Vitis viniferaGSVIVT01033998001GSVIVT01024777001
Volvox carteriVocar20009459mVocar20001320m
Sequence Alignments  (This image is cropped. Click for full image.)
Phylogeny  (This image is cropped. Click for full image.)