CAZyme Information

Basic Information
SpeciesPanicum virgatum
Cazyme IDPavirv00011172m
FamilyCBM20
Protein PropertiesLength: 368 Molecular Weight: 39874.2 Isoelectric Point: 4.0453
ChromosomeChromosome/Scaffold: 085209 Start: 1705 End: 4154
DescriptionCarbohydrate-binding-like fold
View CDS
External Links
CAZyDB
Signature Domain  Download full data set without filtering
FamilyStartEndEvalue
CBM201011861.8e-23
  VRVRFVLEEQCALDQSVYLVGDDPALGLWDPANAMPLELAESHGWILEKDLPANKLIEFKFLLRDSSGKLNWQNGPNRIFQTGETV
Full Sequence
Protein Sequence     Length: 368     Download
MESATAAVRG AGASLARARA AFVCGGGARV PRRVVGAVGL AARGRRRRAL VAVASLHEPL    60
PSRAQEGHVP AAPQADEEEV HGIGSAAPET SSPPVVSGKT VRVRFVLEEQ CALDQSVYLV    120
GDDPALGLWD PANAMPLELA ESHGWILEKD LPANKLIEFK FLLRDSSGKL NWQNGPNRIF    180
QTGETVNTLV VYEDWGDVKN QKIAEEEGVA SVGIEEVVVT DDSESRNESV QAVVLEDELQ    240
MDDNQVVNEV KEDEYFVAEE DEELAVPTNE SAQVDSLKIN EANPQEPMMQ KEPETIDELH    300
EMVDTENGSA LCADDNSATK TEEDDILSED GVPVENGLTS TYEHDLPWGW RAVQELLMNL    360
GIKMDTP* 
Functional Domains Download unfiltered results here
Cdd IDDomainE-ValueStartEndLengthDomain Description
cd02851E_set_GO_C4.0e-13101195100+
cd02853E_set_MTHase_like_N7.0e-1610119595+
smart01065CBM_22.0e-1610118488+
pfam00686CBM_205.0e-2110019195+
cd05467CBM208.0e-2510219597+
Gene Ontology
GO TermDescription
GO:0003824catalytic activity
GO:0005975carbohydrate metabolic process
Annotations - NR Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
GenBankACG39865.1013661359starch binding domain containing protein [Zea mays]
GenBankEEC79312.103436633372hypothetical protein OsI_20148 [Oryza sativa Indica Group]
RefSeqNP_001055691.103436633372Os05g0446900 [Oryza sativa (japonica cultivar-group)]
RefSeqNP_001146081.1013661360hypothetical protein LOC100279613 [Zea mays]
RefSeqXP_002441189.1013661368hypothetical protein SORBIDRAFT_09g021950 [Sorghum bicolor]
Annotations - PDB Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
PDB1v3m_B0.00000000000869195553684A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens
PDB1v3m_A0.00000000000869195553684A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens
PDB1v3k_B0.00000000000869195553684A Chain A, Crystal Structure Of F283y Mutant Cyclodextrin Glycosyltransferase
PDB1v3k_A0.00000000000869195553684A Chain A, Crystal Structure Of F283y Mutant Cyclodextrin Glycosyltransferase
PDB1v3l_B0.00000000000869195553684A Chain A, Crystal Structure Of F283y Mutant Cyclodextrin Glycosyltransferase
Hydropathy
EST Download unfiltered results here
HitLengthStartEndEValue
FL820581236592930
FE6228992201493680
JG9508082291403680
JG8211812081613680
JG8198182531163680
Orthologous Group
SpeciesID
Aquilegia coeruleaAquca_045_00042.3Aquca_045_00042.2Aquca_045_00042.1Aquca_009_00054.3.18.103
Arabidopsis lyrata486949489476
Arabidopsis thalianaAT5G01260.2AT5G01260.1AT5G26570.2AT5G26570.1
Brachypodium distachyonBradi2g55380.3Bradi2g55380.2Bradi2g55380.1
Brassica rapaBra005693
Carica papayaevm.model.supercontig_112.34evm.model.supercontig_163.14
Capsella rubellaCarubv10001501mCarubv10001111mCarubv10000070m
Chlamydomonas reinhardtiiCre17.g719900.t1.2Cre17.g703000.t1.3Cre06.g269650.t1.2Cre12.g551200.t1.2g10103.t1
Cre02.g091750.t2.1Cre02.g091750.t1.2Cre02.g091750.t3.1Cre12.g492750.t1.3.499.578Cre12.g492750.t1.3.499.578
Cre09.g415600.t2.1Cre09.g415600.t1.3Cre12.g492750.t1.3.218.305Cre12.g492750.t1.3.218.305Cre10.g450500.t1.2
Citrus clementinaCiclev10011625mCiclev10011624mCiclev10011524mCiclev10011409mCiclev10005295m
Ciclev10005277mCiclev10004968mCiclev10010989m.24.109
Citrus sinensisorange1.1g012444morange1.1g012471morange1.1g015140morange1.1g002052m.24.109orange1.1g002050m.24.109
orange1.1g002027m.24.109
Cucumis sativusCucsa.176290.3Cucsa.176290.1
Eucalyptus grandisEucgr.K02988.2Eucgr.K02988.1Eucgr.K01679.1.16.104
Fragaria vescamrna18850.1-v1.0-hybrid
Glycine maxGlyma03g08980.1Glyma07g17931.1Glyma03g08820.1Glyma03g08930.1Glyma18g42781.1
Glyma03g08910.2Glyma1061s50.2Glyma1061s50.1Glyma03g08850.2Glyma03g08850.1
Glyma0165s00200.1Glyma01g28520.2Glyma01g28520.1Glyma03g08860.1Glyma03g08893.1
Glyma19g30580.1.16.102Glyma03g27600.1.16.103
Gossypium raimondiiGorai.006G181700.3Gorai.006G181700.2Gorai.006G181700.1Gorai.007G379100.3Gorai.007G379100.2
Gorai.007G379100.1Gorai.011G147600.3Gorai.011G147600.2Gorai.011G147600.1Gorai.010G128900.7.16.102
Gorai.010G128900.6.16.102
Linum usitatissimumLus10004826Lus10002495Lus10027767Lus10035528Lus10018226
Lus10041275Lus10031010.16.103Lus10035408.16.103
Malus domesticaMDP0000179937MDP0000520902MDP0000218204MDP0000256086MDP0000293128
MDP0000162900MDP0000149290.20.108
Manihot esculentacassava4.1_014927mcassava4.1_029798mcassava4.1_001086m.16.100
Medicago truncatulaMedtr4g015550.1Medtr7g088740.1.16.104
Mimulus guttatusmgv1a007499mmgv1a000923m.17.105
Oryza sativaLOC_Os01g63810.2LOC_Os01g63810.1LOC_Os05g37450.1LOC_Os07g46790.1.13.101
Panicum virgatumPavirv00009276mPavirv00009275mPavirv00049022mPavirv00069370m.17.104Pavirv00069369m.17.104
Pavirv00069371m.17.105
Physcomitrella patensPp1s127_37V6.1Pp1s103_94V6.2Pp1s103_94V6.1Pp1s49_209V6.2Pp1s49_209V6.1
Phaseolus vulgarisPhvul.010G002900.1Phvul.008G105500.1Phvul.001G117500.1
Picea abiesMA_10436655g0010
Populus trichocarpaPotri.009G044800.2Potri.009G044800.1Potri.016G114500.7Potri.016G114500.4Potri.016G114500.3
Potri.016G114500.2Potri.016G114500.1Potri.006G099200.3Potri.006G099200.2Potri.006G099200.1
Prunus persicappa007150mppa020714mppa000429mppa000782m.16.104
Ricinus communis29681.m00133229701.m00061530045.m000475.16.104
Setaria italicaSi002103mSi022447mSi028900m.11.98Si028839m.11.98Si034110m.17.104
Selaginella moellendorffii438530415024440606
Sorghum bicolorSb03g040350.1Sb09g021950.1Sb02g042100.1.13.100
Thellungiella halophilaThhalv10014134mThhalv10013736mThhalv10003634m
Vitis viniferaGSVIVT01033976001GSVIVT01025810001.16.103
Volvox carteriVocar20005575mVocar20005574mVocar20000733mVocar20001112mVocar20009467m
Vocar20004703m
Sequence Alignments  (This image is cropped. Click for full image.)
Phylogeny  (This image is cropped. Click for full image.)